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- PDB-2mft: Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex... -
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Basic information
Entry | Database: PDB / ID: 2mft | ||||||||||||||||||||
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Title | Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions | ||||||||||||||||||||
![]() | 5'-D(*![]() DNA / G-Quadruplex | Function / homology | DNA / DNA (> 10) | ![]() Method | SOLUTION NMR / DGSA-distance geometry simulated annealing, molecular dynamics | Model details | lowest energy, model1 | ![]() Karsisiotis, A.I. / Webba da Silva, M. | ![]() ![]() Title: Solution NMR structure of the d(GGGTTTTGGGTGGGTTTTGGG) quadruplex in sodium conditions Authors: Karsisiotis, A.I. / Webba da Silva, M. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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PDBx/mmCIF format | ![]() | 142.9 KB | Display | ![]() |
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PDB format | ![]() | 120 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 400.5 KB | Display | ![]() |
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Full document | ![]() | 560.9 KB | Display | |
Data in XML | ![]() | 32.1 KB | Display | |
Data in CIF | ![]() | 30.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 6643.248 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer | Type: Varian VNMRS 500 / Manufacturer: Varian / Model: VNMRS 500 / Field strength: 500 MHz |
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Processing
NMR software |
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Refinement | Method: DGSA-distance geometry simulated annealing, molecular dynamics Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 88 / Conformers submitted total number: 10 |