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- PDB-2mdl: Structure and NMR assignments of Scylla Serrata anti lipopolysacc... -
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Basic information
Entry | Database: PDB / ID: 2mdl | |||||||||
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Title | Structure and NMR assignments of Scylla Serrata anti lipopolysaccharide Factor-24 (SsALF-24) | |||||||||
![]() | Anti-lipopolysaccharide factor | |||||||||
![]() | ANTIMICROBIAL PROTEIN / antimicrobial | |||||||||
Function / homology | Anti-lipopolysaccharide factor/Scygonadin / Anti-lipopolysaccharide factor/Scygonadin superfamily / Anti-lipopolysaccharide factor/Scygonadin / defense response to bacterium / extracellular region / Anti-lipopolysaccharide factor![]() | |||||||||
Biological species | ![]() | |||||||||
Method | SOLUTION NMR / torsion angle dynamics | |||||||||
Model details | lowest energy, model1 | |||||||||
![]() | Sharma, S. / Barnwal, R. / Yedery, R. / Reddy, K. | |||||||||
![]() | ![]() Title: NMR assignments of Scylla Serrata anti lipopolysaccharide Factor-24 (SsALF-24) Authors: Sharma, S. / Barnwal, R. / Yedery, R. / Reddy, K. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 199.3 KB | Display | ![]() |
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PDB format | ![]() | 176.5 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 385.2 KB | Display | ![]() |
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Full document | ![]() | 452.7 KB | Display | |
Data in XML | ![]() | 9.1 KB | Display | |
Data in CIF | ![]() | 13.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 3116.794 Da / Num. of mol.: 1 / Fragment: UNP residues 54-77 / Source method: obtained synthetically / Source: (synth.) ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 0.5 mM Scylla Serrata anti lipopolysaccharide Factor-1, 93% H2O/7% D2O Solvent system: 93% H2O/7% D2O |
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Sample | Conc.: 0.5 mM / Component: Scylla Serrata anti lipopolysaccharide Factor-1 |
Sample conditions | pH: 7 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 200 / Conformers submitted total number: 20 / Representative conformer: 1 |