+Open data
-Basic information
Entry | Database: PDB / ID: 1kqh | ||||||
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Title | NMR Solution Structure of the cis Pro30 Isomer of ACTX-Hi:OB4219 | ||||||
Components | ACTX-Hi:OB4219 | ||||||
Keywords | TOXIN / Hadronyche infensa / funnel web / spider venom / cis-trans isomerisation / disulfide rich / cystine knot / solution structure / NMR spectroscopy | ||||||
Function / homology | Beta/delta-agatoxin family / Mu-agatoxin family signature. / sodium channel regulator activity / toxin activity / extracellular region / U2-hexatoxin-Hi1a Function and homology information | ||||||
Biological species | Hadronyche infensa (spider) | ||||||
Method | SOLUTION NMR / Torsion angle molecular dynamics. Refinement, energy minimization in a water shell using Cartesian dynamics, powell minimization. | ||||||
Authors | Rosengren, K.J. / Wilson, D. / Daly, N.L. / Alewood, P.F. / Craik, D.J. | ||||||
Citation | Journal: Biochemistry / Year: 2002 Title: Solution structures of the cis- and trans-Pro30 isomers of a novel 38-residue toxin from the venom of Hadronyche Infensa sp. that contains a cystine-knot motif within its four disulfide bonds Authors: Rosengren, K.J. / Wilson, D. / Daly, N.L. / Alewood, P.F. / Craik, D.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1kqh.cif.gz | 214.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1kqh.ent.gz | 187 KB | Display | PDB format |
PDBx/mmJSON format | 1kqh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1kqh_validation.pdf.gz | 344.3 KB | Display | wwPDB validaton report |
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Full document | 1kqh_full_validation.pdf.gz | 455.4 KB | Display | |
Data in XML | 1kqh_validation.xml.gz | 12.9 KB | Display | |
Data in CIF | 1kqh_validation.cif.gz | 21.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/kq/1kqh ftp://data.pdbj.org/pub/pdb/validation_reports/kq/1kqh | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 4230.953 Da / Num. of mol.: 1 / Source method: isolated from a natural source Details: Hadronyche infensa found at Orchid Beach, Fraser Island, Australia Source: (natural) Hadronyche infensa (spider) / References: UniProt: P60272*PLUS |
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Sequence details | sequence an appropriate sequence database reference was not available at the time of processing. |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: This strcuture was determined using standard 2D NMR techniques. |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: Torsion angle molecular dynamics. Refinement, energy minimization in a water shell using Cartesian dynamics, powell minimization. Software ordinal: 1 Details: Initial structures were generated by torsion angle dynamics. These were then refined and minimized in a water shell using Cartesian dynamics and restrained powell minimization according to ...Details: Initial structures were generated by torsion angle dynamics. These were then refined and minimized in a water shell using Cartesian dynamics and restrained powell minimization according to ARIA and CNS protocols. | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations, structures with the lowest energy Conformers calculated total number: 50 / Conformers submitted total number: 20 |