Mass: 8363.147 Da / Num. of mol.: 1 / Fragment: Core Domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) Feline calicivirus / Strain: F9 / Gene: ORF1, VPg / Plasmid: pQE30 / Production host: Escherichia coli (E. coli) / Strain (production host): Bl21(DE3) / References: UniProt: P27409
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Experimental details
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Experiment
Experiment
Method: SOLUTION NMR
NMR experiment
Conditions-ID
Experiment-ID
Solution-ID
Type
1
1
1
2D 1H-15N HSQC
1
2
1
3D HN(CA)CB
1
3
1
3DCBCA(CO)NH
1
4
1
3D HNCO
1
5
1
3DHBHA(CBCACO)NH
1
6
1
3D 1H-15N NOESY
2
7
2
3D (H)CCH-TOCSY
2
8
2
3D 1H-13C NOESY
2
9
2
2D 1H-13C HSQC aromatic
2
10
2
2D 1H-13C HSQC aliphatic
3
11
3
2D 1H-15N HSQC
1
12
1
3DHN(CA)CO
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Sample preparation
Details
Solution-ID
Contents
Solvent system
1
100-200 uM [U-99% 13C; U-99% 15N] FCV VPg 7-76, 300 mM sodium chloride, 20 mM HEPES, 1 mM sodium azide, 90% H2O/10% D2O
90% H2O/10% D2O
2
100-200 uM [U-99% 13C; U-99% 15N] FCV VPg 7-76, 300 mM sodium chloride, 1 mM sodium azide, 20 mM HEPES, 100% D2O
100% D2O
3
100-200 uM [U-99% 13C; U-99% 15N] FCV VPg 7-76, 300 mM sodium chloride, 1 mM sodium azide, 20 mM HEPES, 15 mg/mL Pf1 phage, 90% H2O/10% D2O
90% H2O/10% D2O
Sample
Conc. (mg/ml)
Units
Component
Isotopic labeling
Conc. range (mg/ml)
Solution-ID
uM
FCV VPg 7-76-1
[U-99% 13C; U-99% 15N]
100-200
1
300mM
sodium chloride-2
1
20mM
HEPES-3
1
1mM
sodium azide-4
1
uM
FCV VPg 7-76-5
[U-99% 13C; U-99% 15N]
100-200
2
300mM
sodium chloride-6
2
1mM
sodium azide-7
2
20mM
HEPES-8
2
uM
FCV VPg 7-76-9
[U-99% 13C; U-99% 15N]
100-200
3
300mM
sodium chloride-10
3
1mM
sodium azide-11
3
20mM
HEPES-12
3
15mg/mL
Pf1 phage-13
3
Sample conditions
Conditions-ID
Ionic strength
pH
Pressure (kPa)
Temperature (K)
1
300
7
ambient
283K
2
300
7
ambient
283K
3
300
7
Ambient
280K
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NMR measurement
NMR spectrometer
Type
Manufacturer
Model
Field strength (MHz)
Spectrometer-ID
Bruker DRX
Bruker
DRX
500
1
Bruker Avance
Bruker
AVANCE
800
2
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Processing
NMR software
Name
Developer
Classification
TALOS
Cornilescu, DelaglioandBax
geometryoptimization
ARIA
Linge, O'DonoghueandNilges
structuresolution
NMRView
Johnson, OneMoonScientific
chemicalshiftassignment
NMRView
Johnson, OneMoonScientific
dataanalysis
MARS
Zweckstetteretal., 2004
chemicalshiftassignment
NMRPipe
Delaglio, Grzesiek, Vuister, Zhu, PfeiferandBax
dataanalysis
CNS
Brunger, Adams, Clore, Gros, NilgesandRead
refinement
Refinement
Method: simulated annealing / Software ordinal: 1
NMR constraints
NOE constraints total: 1172 / NOE intraresidue total count: 373 / NOE long range total count: 144 / NOE medium range total count: 153 / NOE sequential total count: 197
NMR representative
Selection criteria: closest to the average
NMR ensemble
Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20
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