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Open data
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Basic information
Entry | Database: PDB / ID: 2lsc | ||||||||||||||||||||
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Title | Solution structure of 2'F-ANA and ANA self-complementary duplex | ||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / Dickerson Drew dodecamer | Function / homology | DNA / DNA (> 10) | ![]() Method | SOLUTION NMR / molecular dynamics | Model details | closest to the average, model 13 | ![]() Martin-Pintado, N. / Yahyaee, M. / Campos, R. / Noronha, A. / Wilds, C. / Damha, M. / Gonzalez, C. | ![]() ![]() Title: The solution structure of double helical arabino nucleic acids (ANA and 2'F-ANA): effect of arabinoses in duplex-hairpin interconversion. Authors: Martin-Pintado, N. / Yahyaee-Anzahaee, M. / Campos-Olivas, R. / Noronha, A.M. / Wilds, C.J. / Damha, M.J. / Gonzalez, C. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 296 KB | Display | ![]() |
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PDB format | ![]() | 251.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 431.7 KB | Display | ![]() |
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Full document | ![]() | 644.5 KB | Display | |
Data in XML | ![]() | 28.4 KB | Display | |
Data in CIF | ![]() | 32.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 3843.264 Da / Num. of mol.: 2 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||
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Sample preparation
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-NMR measurement
NMR spectrometer |
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Processing
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Refinement | Method: molecular dynamics / Software ordinal: 1 | |||||||||||||||
NMR constraints | NOE constraints total: 194 / NOE intraresidue total count: 83 / NOE long range total count: 32 / NOE sequential total count: 61 / Hydrogen bond constraints total count: 64 | |||||||||||||||
NMR representative | Selection criteria: closest to the average | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 30 / Conformers submitted total number: 20 |