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Open data
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Basic information
Entry | Database: PDB / ID: 2l3d | ||||||
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Title | The solution structure of the short form SWIRM domain of LSD1 | ||||||
![]() | Lysine-specific histone demethylase 1A | ||||||
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Function / homology | ![]() positive regulation of histone ubiquitination / guanine metabolic process / regulation of DNA methylation-dependent heterochromatin assembly / histone H3-di/monomethyl-lysine-4 FAD-dependent demethylase activity / [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
Model details | lowest energy, model 1 | ||||||
![]() | Liu, C. / Lo, K. / Zhu, G. / Sze, K. | ||||||
![]() | ![]() Title: The chemical shift assignment of the SWIRM domain of LSD1 Authors: Liu, C. / Luo, R. / Sze, K. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 646.3 KB | Display | ![]() |
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PDB format | ![]() | 563.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 211.1 KB | Display | ![]() |
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Full document | ![]() | 321.7 KB | Display | |
Data in XML | ![]() | 31.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Assembly
Deposited unit | ![]()
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1 |
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NMR ensembles |
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Components
#1: Protein | Mass: 11765.438 Da / Num. of mol.: 1 / Fragment: SWIRM domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions | Ionic strength: 50 / pH: 6.5 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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Processing
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Refinement | Method: ![]() | ||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 20 / Representative conformer: 1 |