cellular response to diamide / Defective Inhibition of DNA Recombination at Telomere Due to DAXX Mutations / Defective Inhibition of DNA Recombination at Telomere Due to ATRX Mutations / SUMO-modified protein reader activity / neuron intrinsic apoptotic signaling pathway in response to oxidative stress / cellular response to sodium arsenite / transcription regulator inhibitor activity / nuclear androgen receptor binding / protein kinase activator activity / androgen receptor signaling pathway ...cellular response to diamide / Defective Inhibition of DNA Recombination at Telomere Due to DAXX Mutations / Defective Inhibition of DNA Recombination at Telomere Due to ATRX Mutations / SUMO-modified protein reader activity / neuron intrinsic apoptotic signaling pathway in response to oxidative stress / cellular response to sodium arsenite / transcription regulator inhibitor activity / nuclear androgen receptor binding / protein kinase activator activity / androgen receptor signaling pathway / regulation of protein ubiquitination / chromosome, centromeric region / extrinsic apoptotic signaling pathway via death domain receptors / positive regulation of protein kinase activity / cellular response to unfolded protein / JNK cascade / cellular response to copper ion / Inhibition of DNA recombination at telomere / heat shock protein binding / cellular response to cadmium ion / SUMOylation of transcription cofactors / molecular condensate scaffold activity / PML body / HCMV Early Events / transcription corepressor activity / nucleosome assembly / Regulation of TP53 Degradation / p53 binding / cellular response to heat / histone binding / regulation of gene expression / regulation of apoptotic process / RNA polymerase II-specific DNA-binding transcription factor binding / transcription coactivator activity / nuclear body / chromatin remodeling / positive regulation of protein phosphorylation / negative regulation of gene expression / negative regulation of DNA-templated transcription / ubiquitin protein ligase binding / regulation of DNA-templated transcription / nucleolus / protein kinase binding / enzyme binding / protein homodimerization activity / nucleoplasm / nucleus / cytosol 類似検索 - 分子機能
分子量: 10950.833 Da / 分子数: 1 / 断片: UNP residues 55 to 144 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) 解説: Cloned into pET28a from a human cDNA library, using NdeI and XhoI 遺伝子: DAXX, DADB-159G18.9-007, DAMC-227D19.15-007, DAQB-126H3.2-007, XXbac-BCX165D10.3-007, XXbac-BPG185D15.6-007 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): BL21 / 参照: UniProt: Q4VX54, UniProt: Q9UER7*PLUS
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実験情報
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実験
実験
手法: 溶液NMR
NMR実験
Conditions-ID
Experiment-ID
Solution-ID
タイプ
1
1
1
2D 1H-15N HSQC
1
2
1
3D HN(CA)CB
1
3
1
2D 1H-13C HSQC
1
4
1
3DCBCA(CO)NH
1
5
1
3DHBHA(CO)NH
1
6
1
3D (H)CCH-TOCSY
1
7
1
3D 1H-15N NOESY
1
8
1
3D 1H-15N TOCSY
1
9
1
3D 1H-13C NOESY
1
10
1
3D H(CC)(CO)NH-TOCSY
1
11
1
2D (HB)CB(CGCD)HD
1
12
1
2D (HB)CBCGCDCE)HE
1
13
1
2D HMBC
1
14
2
2D 1H-13C HSQC
1
15
1
CT methyl-methyl-HSQC
1
16
1
CT amide-methyl-HSQC
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試料調製
詳細
Solution-ID
内容
溶媒系
1
1.2 mM [U-100% 13C; U-100% 15N] DAXX-1, 10 mM potassium phosphate-2, 100 mM KCl-3, 0.1 mM EDTA-4, 95% H2O/5% D2O
95% H2O/5% D2O
2
0.8 mM [U-10% 13C] DAXX-5, 95% H2O/5% D2O
95% H2O/5% D2O
試料
濃度 (mg/ml)
構成要素
Isotopic labeling
Solution-ID
1.2mM
DAXX-1
[U-100% 13C; U-100% 15N]
1
10mM
potassium phosphate-2
1
100mM
KCl-3
1
0.1mM
EDTA-4
1
0.8mM
DAXX-5
[U-10% 13C]
2
試料状態
イオン強度: 0.16 / pH: 6.5 / 圧: ambient / 温度: 298 K
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NMR測定
NMRスペクトロメーター
タイプ
製造業者
モデル
磁場強度 (MHz)
Spectrometer-ID
Varian INOVA
Varian
INOVA
600
1
Varian Unity
Varian
UNITY
500
2
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解析
NMR software
名称
バージョン
開発者
分類
ARIA
2.2
Linge, O'DonoghueandNilges
構造決定
ARIA
2.2
Linge, O'DonoghueandNilges
semi-automatic peak assignment
ARIA
2.2
Linge, O'DonoghueandNilges
精密化
精密化
手法: simulated annealing / ソフトェア番号: 1
NMR constraints
NOE constraints total: 3585 / NOE intraresidue total count: 1153 / NOE long range total count: 761 / NOE medium range total count: 962 / NOE sequential total count: 709 / Protein chi angle constraints total count: 0 / Protein other angle constraints total count: 0 / Protein phi angle constraints total count: 69 / Protein psi angle constraints total count: 69
代表構造
選択基準: lowest energy
NMRアンサンブル
コンフォーマー選択の基準: structures with the lowest energy 計算したコンフォーマーの数: 120 / 登録したコンフォーマーの数: 25 / Maximum lower distance constraint violation: 0.02 Å / Maximum upper distance constraint violation: 0.28 Å