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Yorodumi- PDB-2kxt: NMR structure and calcium-binding properties of the tellurite res... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2kxt | ||||||
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Title | NMR structure and calcium-binding properties of the tellurite resistance protein TerD from Klebsiella pneumoniae | ||||||
Components | Tellurite resistance protein | ||||||
Keywords | UNKNOWN FUNCTION / KP-TerD / tellurite resistance / Ca2+ binding protein / calcium signaling | ||||||
Function / homology | sav2460 like domains / Lipoxygenase-1 / Sandwich / Mainly Beta / : Function and homology information | ||||||
Biological species | Klebsiella pneumoniae (bacteria) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Model details | lowest energy, model 1 | ||||||
Authors | Pan, Y.R. / Lou, Y.C. / Rizo, J. / Chen, C. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 2010 Title: NMR Structure and Calcium-Binding Properties of the Tellurite Resistance Protein TerD from Klebsiella pneumoniae Authors: Pan, Y.R. / Lou, Y.C. / Seven, A.B. / Rizo, J. / Chen, C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2kxt.cif.gz | 1004 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2kxt.ent.gz | 836.7 KB | Display | PDB format |
PDBx/mmJSON format | 2kxt.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2kxt_validation.pdf.gz | 348 KB | Display | wwPDB validaton report |
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Full document | 2kxt_full_validation.pdf.gz | 537.4 KB | Display | |
Data in XML | 2kxt_validation.xml.gz | 79 KB | Display | |
Data in CIF | 2kxt_validation.cif.gz | 100.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/kx/2kxt ftp://data.pdbj.org/pub/pdb/validation_reports/kx/2kxt | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 21585.689 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Klebsiella pneumoniae (bacteria) / Strain: NTUH-K2044 / Gene: terD / Plasmid: pET29b / Production host: Escherichia coli (E. coli) / Strain (production host): BL 21 DE3 / References: UniProt: C4XDJ3 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR Details: The N-terminal 18 residues of KP-TerD are not included in the structural calculation, since they lack of long-range NOEs and have chemical shifts that are similar to those of random coils. ...Details: The N-terminal 18 residues of KP-TerD are not included in the structural calculation, since they lack of long-range NOEs and have chemical shifts that are similar to those of random coils. Please notice that the structure deposit here is from 19 to 192 amino acids of KP-TerD. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 20mM potassium phosphate-1, 90% H2O/10% D2O / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 20 mM / Component: potassium phosphate-1 |
Sample conditions | Ionic strength: 0.02 / pH: 7 / Pressure: ambient / Temperature: 310 K |
-NMR measurement
NMR spectrometer | Type: Bruker Avance / Manufacturer: Bruker / Model: AVANCE / Field strength: 800 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 500 / Conformers submitted total number: 20 / Representative conformer: 1 |