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Open data
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Basic information
Entry | Database: PDB / ID: 2kf0 | ||||||||||||||||||
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Title | NMR structure of U6 ISL at pH 7.0 | ||||||||||||||||||
![]() | RNA (5'-R(*![]() RNA / U6 RNA / stem loop / bulge / internal loop | Function / homology | RNA / RNA (> 10) | ![]() Method | SOLUTION NMR / molecular dynamics | ![]() Venditti, V. / Butcher, S.E. | ![]() ![]() Title: Minimum-energy path for a u6 RNA conformational change involving protonation, base-pair rearrangement and base flipping. Authors: Venditti, V. / Clos, L. / Niccolai, N. / Butcher, S.E. #1: ![]() Title: Structure of the U6 RNA intramolecular stem-loop harboring an S(P)-phosphorothioate modification. Authors: Reiter, N.J. / Nikstad, L.J. / Allmann, A.M. / Johnson, R.J. / Butcher, S.E. #2: ![]() Title: Dynamics in the U6 RNA intramolecular stem-loop: a base flipping conformational change. Authors: Reiter, N.J. / Blad, H. / Abildgaard, F. / Butcher, S.E. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 151 KB | Display | ![]() |
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PDB format | ![]() | 126.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 314.4 KB | Display | ![]() |
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Full document | ![]() | 355.2 KB | Display | |
Data in XML | ![]() | 3.6 KB | Display | |
Data in CIF | ![]() | 6.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: RNA chain | Mass: 7668.615 Da / Num. of mol.: 1 / Mutation: A62G / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 1 | ||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 12 / Conformers submitted total number: 10 |