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- PDB-2k10: Confirmational analysis of the broad-spectrum antibacterial pepti... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2k10 | ||||||
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Title | Confirmational analysis of the broad-spectrum antibacterial peptide, rantuerin-2csa: identification of a full length helix-turn-helix motif | ||||||
![]() | ranatuerin-2csa | ||||||
![]() | ANTIMICROBIAL PROTEIN / MOLECULAR MODELLING / HELIX-TURN-HELIX / DISULFIDE BOND / ANTIMICROBIAL PEPTIDE | ||||||
Function / homology | Frog antimicrobial peptide, brevinin-2/esculentin type / Frog antimicrobial peptide / defense response to bacterium / extracellular region / Ranatuerin-2csa![]() | ||||||
Biological species | Rana cascadae (frog) | ||||||
Method | SOLUTION NMR / torsion angle dynamics, simulated annealing, Conjugated gradient minimization, Powell minimization | ||||||
![]() | Hewage, C.M. / Subasinghage, A.P. / Conlon, M. | ||||||
![]() | ![]() Title: Conformational analysis of the broad-spectrum antibacterial peptide, ranatuerin-2CSa: Identification of a full length helix-turn-helix motif. Authors: Subasinghage, A.P. / Conlon, J.M. / Hewage, C.M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 185.7 KB | Display | ![]() |
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PDB format | ![]() | 161.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 338.3 KB | Display | ![]() |
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Full document | ![]() | 378.3 KB | Display | |
Data in XML | ![]() | 9.4 KB | Display | |
Data in CIF | ![]() | 16 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 3255.977 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Rana cascadae (frog) / References: UniProt: V9GZ92*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 1.5-2.0 mM Peptide, 1:1 mixture of TFE-d3 and H2O / Solvent system: 1:1 mixture of TFE-d3 and H2O |
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Sample | Conc.: 1.5 mM / Component: Peptide |
Sample conditions | pH: 3.2 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: torsion angle dynamics, simulated annealing, Conjugated gradient minimization, Powell minimization Software ordinal: 1 | ||||||||||||||||
NMR representative | Selection criteria: fewest violations | ||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 200 / Conformers submitted total number: 20 |