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- PDB-2jwn: Solution NMR structure of the protease-resistent domain of Xenopu... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2jwn | ||||||
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Title | Solution NMR structure of the protease-resistent domain of Xenopus laevis ePABP2 | ||||||
![]() | Embryonic polyadenylate-binding protein 2-B | ||||||
![]() | RNA BINDING PROTEIN / ePABP2 / poly(A) binding / Structural Genomics / Protein Structure Initiative / PSI-2 / Center for Eukaryotic Structural Genomics / Cytoplasm RNA-binding / CESG | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / Torsion Angle Dynamics, Simulated Annealing | ||||||
![]() | Song, J. / Markley, J.L. / Center for Eukaryotic Structural Genomics (CESG) | ||||||
![]() | ![]() Title: Structural basis for RNA recognition by a type II poly(A)-binding protein. Authors: Song, J. / McGivern, J.V. / Nichols, K.W. / Markley, J.L. / Sheets, M.D. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 1.6 MB | Display | ![]() |
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PDB format | ![]() | 1.3 MB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 369.6 KB | Display | ![]() |
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Full document | ![]() | 638.4 KB | Display | |
Data in XML | ![]() | 85.1 KB | Display | |
Data in CIF | ![]() | 128.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 13551.257 Da / Num. of mol.: 2 / Fragment: Protease-resistent domain: Residues 60-180 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: Torsion Angle Dynamics, Simulated Annealing / Software ordinal: 1 Details: STRUCTURES ARE BASED ON A TOTAL OF 4178 NOE RESTRAINTS (1672 INTRA, 866 SEQUENTIAL, 562 MEDIUM, 912 LONG RANGE INTERMOLECULAR AND 166 INTERMOLECULAR), 116 HBOND RESTRAINTS, 326 PHI AND PSI ...Details: STRUCTURES ARE BASED ON A TOTAL OF 4178 NOE RESTRAINTS (1672 INTRA, 866 SEQUENTIAL, 562 MEDIUM, 912 LONG RANGE INTERMOLECULAR AND 166 INTERMOLECULAR), 116 HBOND RESTRAINTS, 326 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS AND 188 N-H RDC CONSTRAINTS | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 20 |