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- PDB-2jvu: Solution Structure of Dispersin from Enteroaggregative Escherichi... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2jvu | ||||||
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Title | Solution Structure of Dispersin from Enteroaggregative Escherichia coli | ||||||
![]() | DISPERSIN | ||||||
![]() | UNKNOWN FUNCTION / BETA SANDWICH | ||||||
Function / homology | Immunoglobulin-like - #2290 / Immunoglobulin-like / Sandwich / Mainly Beta / Uncharacterized protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR / DISTANCE GEOMETRY, SIMULATED ANNEALING | ||||||
![]() | Velarde, J.J. / Varney, K.M. / Farfan, K. / Dudley, D. / Inman, J.G. / Fletcher, J. / Weber, D.J. / Nataro, J.P. | ||||||
![]() | ![]() Title: Solution structure of the novel dispersin protein of enteroaggregative Escherichia coli. Authors: Velarde, J.J. / Varney, K.M. / Inman, K.G. / Farfan, M. / Dudley, E. / Fletcher, J. / Weber, D.J. / Nataro, J.P. | ||||||
History |
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Remark 999 | Sequence The sequence is not available in the UniProt database at the time of processing. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 551.4 KB | Display | ![]() |
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PDB format | ![]() | 483.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 345.1 KB | Display | ![]() |
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Full document | ![]() | 477.8 KB | Display | |
Data in XML | ![]() | 31.3 KB | Display | |
Data in CIF | ![]() | 53.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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NMR ensembles |
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Components
#1: Protein | Mass: 11324.377 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 0.5-1.5 mM [U-100% 13C; U-100% 15N] DISPERSIN, 90% H2O/10% D2O Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 0.5 mM / Component: DISPERSIN, AAP / Isotopic labeling: [U-100% 13C; U-100% 15N] |
Sample conditions | Ionic strength: 45mM PHOS, 45mM NACL, 0.2mM EDTA / pH: 6.5 / Pressure: AMBIENT / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: BRUKER DMX / Manufacturer: Bruker / Model: DMX / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: DISTANCE GEOMETRY, SIMULATED ANNEALING / Software ordinal: 1 Details: INITIAL NOE STRUCTURE REFINED WITH RESIDUAL DIPOLAR COUPLING DATA | ||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 20 |