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Yorodumi- PDB-2ifo: MODEL-BUILDING STUDIES OF INOVIRUS: GENETIC VARIATIONS ON A GEOME... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2ifo | ||||||
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Title | MODEL-BUILDING STUDIES OF INOVIRUS: GENETIC VARIATIONS ON A GEOMETRIC THEME | ||||||
Components | INOVIRUS | ||||||
Keywords | VIRUS / Helical virus | ||||||
Function / homology | Inovirus Coat protein B / Capsid protein G8P / helical viral capsid / host cell membrane / membrane => GO:0016020 / Capsid protein G8P Function and homology information | ||||||
Biological species | Filamentous phage (virus) | ||||||
Method | FIBER DIFFRACTION | ||||||
Authors | Marvin, D.A. | ||||||
Citation | Journal: Int.J.Biol.Macromol. / Year: 1990 Title: Model-building studies of Inovirus: genetic variations on a geometric theme. Authors: Marvin, D.A. #1: Journal: Int.J.Biol.Macromol. / Year: 1989 Title: Dynamics of Telescoping Inovirus: A Mechanism for Assembly at Membrane Adhesions Authors: Marvin, D.A. #2: Journal: J.Mol.Biol. / Year: 1974 Title: Filamentous Bacterial Viruses Xii. Molecular Architecture of the Class II (Pf1, Xf) Virion Authors: Marvin, D.A. / Wiseman, R.L. / Wachtel, E.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2ifo.cif.gz | 16.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2ifo.ent.gz | 9.7 KB | Display | PDB format |
PDBx/mmJSON format | 2ifo.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2ifo_validation.pdf.gz | 336.1 KB | Display | wwPDB validaton report |
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Full document | 2ifo_full_validation.pdf.gz | 338.3 KB | Display | |
Data in XML | 2ifo_validation.xml.gz | 2.2 KB | Display | |
Data in CIF | 2ifo_validation.cif.gz | 2.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/if/2ifo ftp://data.pdbj.org/pub/pdb/validation_reports/if/2ifo | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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3 |
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Unit cell |
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Symmetry | Helical symmetry: (Circular symmetry: 1 / Dyad axis: no / N subunits divisor: 1 / Num. of operations: 35 / Rise per n subunits: 3.05 Å / Rotation per n subunits: 65.915 °) |
-Components
#1: Protein/peptide | Mass: 4459.245 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Filamentous phage (virus) / Strain: XF MAJOR / References: UniProt: P03622 |
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Sequence details | THE SEQUENCE USED IS AN UNPUBLISHED SEQUENCE CITED BY DAY ET AL., ANN. REV. BIOPHYS. BIOPHYS. CHEM. ...THE SEQUENCE USED IS AN UNPUBLISHE |
-Experimental details
-Experiment
Experiment | Method: FIBER DIFFRACTION |
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-Processing
Software | Name: EREF / Classification: refinement | ||||||||||||
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Refinement | Details: THE TEMPERATURE FACTOR WAS NOT REFINED AND IS GIVEN THE ARBITRARY VALUE OF 10. | ||||||||||||
Refinement step | Cycle: LAST
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