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Yorodumi- PDB-4ifm: PF1 FILAMENTOUS BACTERIOPHAGE: REFINEMENT OF A MOLECULAR MODEL BY... -
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-Basic information
Entry | Database: PDB / ID: 4ifm | ||||||
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Title | PF1 FILAMENTOUS BACTERIOPHAGE: REFINEMENT OF A MOLECULAR MODEL BY SIMULATED ANNEALING USING 3.3 ANGSTROMS RESOLUTION X-RAY FIBRE DIFFRACTION DATA | ||||||
Components | PF1 FILAMENTOUS BACTERIOPHAGE | ||||||
Keywords | VIRUS / VIRUS COAT PROTEIN / Helical virus | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Pseudomonas phage Pf1 (virus) | ||||||
Method | FIBER DIFFRACTION / Resolution: 3.3 Å | ||||||
Authors | Marvin, D.A. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1995 Title: Pf1 filamentous bacteriophage: refinement of a molecular model by simulated annealing using 3.3 A resolution X-ray fibre diffraction data. Authors: Gonzalez, A. / Nave, C. / Marvin, D.A. #1: Journal: Phase Transitions / Year: 1992 Title: Two Forms of Pf1 Inovirus: X-Ray Diffraction Studies on a Structural Phase Transition and a Calculated Libration Normal Mode of the Asymmetric Unit Authors: Marvin, D.A. / Nave, C. / Bansal, M. / Hale, R.D. / Salje, E.K.H. #2: Journal: Int.J.Biol.Macromol. / Year: 1990 Title: Model-Building Studies of Inovirus: Genetic Variations on a Geometric Theme Authors: Marvin, D.A. #3: Journal: Int.J.Biol.Macromol. / Year: 1989 Title: Dynamics of Telescoping Inovirus: A Mechanism for Assembly at Membrane Adhesions Authors: Marvin, D.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 4ifm.cif.gz | 16.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb4ifm.ent.gz | 10.5 KB | Display | PDB format |
PDBx/mmJSON format | 4ifm.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 4ifm_validation.pdf.gz | 339.1 KB | Display | wwPDB validaton report |
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Full document | 4ifm_full_validation.pdf.gz | 340.6 KB | Display | |
Data in XML | 4ifm_validation.xml.gz | 2.4 KB | Display | |
Data in CIF | 4ifm_validation.cif.gz | 3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/if/4ifm ftp://data.pdbj.org/pub/pdb/validation_reports/if/4ifm | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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3 |
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Unit cell |
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Symmetry | Helical symmetry: (Circular symmetry: 1 / Dyad axis: no / N subunits divisor: 1 / Num. of operations: 35 / Rise per n subunits: 3.05 Å / Rotation per n subunits: 65.915 °) |
-Components
#1: Protein/peptide | Mass: 4612.393 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: GROWN IN PSEUDOMONAS AERUGINOSA / Source: (natural) Pseudomonas phage Pf1 (virus) / Genus: Inovirus / References: UniProt: P03621 |
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-Experimental details
-Experiment
Experiment | Method: FIBER DIFFRACTION |
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-Processing
Software |
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Refinement | Highest resolution: 3.3 Å Details: COORDINATES ARE GIVEN FOR A SINGLE ASYMMETRIC UNIT OF THE COAT PROTEIN ASSEMBLY. THE COMPLETE PROTEIN ASSEMBLY CONTAINS SEVERAL THOUSAND ASYMMETRIC UNITS; THE EXACT NUMBER DEPENDS ON THE ...Details: COORDINATES ARE GIVEN FOR A SINGLE ASYMMETRIC UNIT OF THE COAT PROTEIN ASSEMBLY. THE COMPLETE PROTEIN ASSEMBLY CONTAINS SEVERAL THOUSAND ASYMMETRIC UNITS; THE EXACT NUMBER DEPENDS ON THE LENGTH OF THE DNA. THE PROTEIN ASSEMBLY FORMS A CYLINDRICAL SHELL SURROUNDING A DNA CORE. | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 3.3 Å
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