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- PDB-2hqv: X-ray Crystal Structure of Protein AGR_C_4470 from Agrobacterium ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2hqv | ||||||
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Title | X-ray Crystal Structure of Protein AGR_C_4470 from Agrobacterium tumefaciens. Northeast Structural Genomics Consortium Target AtR92. | ||||||
![]() | AGR_C_4470p | ||||||
![]() | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / NESG / AtR92 / AGR_C_4470 / Q7CX01_AGRT5 / PSI-2 / Protein Structure Initiative / Northeast Structural Genomics Consortium | ||||||
Function / homology | Intracellular heme transport protein HutX-like / Haem utilisation ChuX/HutX / HemS/ChuS/ChuX like domains / Heme iron utilization protein-like fold / 3-Layer(aba) Sandwich / Alpha Beta / Uncharacterized protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Vorobiev, S.M. / Neely, H. / Seetharaman, J. / Zhao, L. / Cunningham, K. / Ma, L.C. / Fang, Y. / Xiao, R. / Acton, T. / Montelione, T.G. ...Vorobiev, S.M. / Neely, H. / Seetharaman, J. / Zhao, L. / Cunningham, K. / Ma, L.C. / Fang, Y. / Xiao, R. / Acton, T. / Montelione, T.G. / Hunt, J.F. / Tong, L. / Northeast Structural Genomics Consortium (NESG) | ||||||
![]() | ![]() Title: Crystal structure of AGR_C_4470p from Agrobacterium tumefaciens. Authors: Vorobiev, S.M. / Neely, H. / Seetharaman, J. / Ma, L.C. / Xiao, R. / Acton, T.B. / Montelione, G.T. / Tong, L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 42.4 KB | Display | ![]() |
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PDB format | ![]() | 32.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 429.3 KB | Display | ![]() |
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Full document | ![]() | 433.5 KB | Display | |
Data in XML | ![]() | 9.4 KB | Display | |
Data in CIF | ![]() | 12.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Details | Dimer. The second part of the dimer is generated by -X, -Y, Z + (1 0 0) operator. |
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Components
#1: Protein | Mass: 21620.748 Da / Num. of mol.: 1 / Mutation: C-tag: LEHHHHHH Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Species: Agrobacterium tumefaciens / Strain: C58-ATCC 33970 / Gene: AGR_C_4470 / Plasmid: pET21 / Production host: ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.9 Å3/Da / Density % sol: 57.57 % Description: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 6 Details: 40% PEG 400, 0.1M Magnesium sulfate, 0.1M MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
-Data collection
Diffraction | Mean temperature: 100 K | |||||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | |||||||||||||||
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Jul 13, 2006 | |||||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2→30 Å / Num. all: 32944 / Num. obs: 32911 / % possible obs: 99.9 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 7.5 % / Biso Wilson estimate: 21.3 Å2 / Rmerge(I) obs: 0.067 / Net I/σ(I): 28.5 | |||||||||||||||
Reflection shell | Resolution: 2→2.07 Å / Redundancy: 6.5 % / Rmerge(I) obs: 0.544 / Mean I/σ(I) obs: 3.4 / % possible all: 99.9 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 55.1963 Å2 / ksol: 0.368725 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 42 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2→29.76 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2→2.13 Å / Rfactor Rfree error: 0.018 / Total num. of bins used: 6
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Xplor file |
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