+Open data
-Basic information
Entry | Database: PDB / ID: 2hqh | ||||||
---|---|---|---|---|---|---|---|
Title | Crystal structure of p150Glued and CLIP-170 | ||||||
Components |
| ||||||
Keywords | STRUCTURAL PROTEIN / PROTEIN BINDING / beta/beta structure / zinc finger motif | ||||||
Function / homology | Function and homology information centriolar subdistal appendage / positive regulation of neuromuscular junction development / centriole-centriole cohesion / cell cortex region / ventral spinal cord development / microtubule anchoring at centrosome / maintenance of synapse structure / melanosome transport / nuclear membrane disassembly / cell tip ...centriolar subdistal appendage / positive regulation of neuromuscular junction development / centriole-centriole cohesion / cell cortex region / ventral spinal cord development / microtubule anchoring at centrosome / maintenance of synapse structure / melanosome transport / nuclear membrane disassembly / cell tip / positive regulation of microtubule nucleation / microtubule plus-end / XBP1(S) activates chaperone genes / dynein complex / COPI-independent Golgi-to-ER retrograde traffic / non-motile cilium assembly / microtubule bundle formation / microtubule plus-end binding / retrograde transport, endosome to Golgi / nuclear migration / motor behavior / microtubule associated complex / neuromuscular process / intermediate filament / neuromuscular junction development / intercellular bridge / cell leading edge / establishment of mitotic spindle orientation / RHO GTPases activate IQGAPs / Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal / COPI-mediated anterograde transport / Mitotic Prometaphase / EML4 and NUDC in mitotic spindle formation / cytoplasmic microtubule organization / regulation of mitotic spindle organization / Loss of Nlp from mitotic centrosomes / Loss of proteins required for interphase microtubule organization from the centrosome / positive regulation of microtubule polymerization / Recruitment of mitotic centrosome proteins and complexes / Resolution of Sister Chromatid Cohesion / ruffle / Recruitment of NuMA to mitotic centrosomes / Anchoring of the basal body to the plasma membrane / neuron projection maintenance / HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand / MHC class II antigen presentation / centriole / tubulin binding / AURKA Activation by TPX2 / ciliary basal body / RHO GTPases Activate Formins / cytoplasmic vesicle membrane / tau protein binding / mitotic spindle / kinetochore / spindle pole / neuron cellular homeostasis / spindle / Separation of Sister Chromatids / microtubule cytoskeleton / Regulation of PLK1 Activity at G2/M Transition / Signaling by ALK fusions and activated point mutants / nuclear envelope / nervous system development / mitotic cell cycle / cell cortex / microtubule binding / microtubule / neuron projection / cell division / axon / centrosome / neuronal cell body / protein kinase binding / zinc ion binding / identical protein binding / membrane / nucleus / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 1.8 Å | ||||||
Authors | Hayashi, I. / Ikura, M. | ||||||
Citation | Journal: Nat.Struct.Mol.Biol. / Year: 2007 Title: CLIP170 autoinhibition mimics intermolecular interactions with p150Glued or EB1. Authors: Hayashi, I. / Plevin, M.J. / Ikura, M. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 2hqh.cif.gz | 95.6 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb2hqh.ent.gz | 73.8 KB | Display | PDB format |
PDBx/mmJSON format | 2hqh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2hqh_validation.pdf.gz | 462.3 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 2hqh_full_validation.pdf.gz | 466.3 KB | Display | |
Data in XML | 2hqh_validation.xml.gz | 21.4 KB | Display | |
Data in CIF | 2hqh_validation.cif.gz | 32.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hq/2hqh ftp://data.pdbj.org/pub/pdb/validation_reports/hq/2hqh | HTTPS FTP |
-Related structure data
Related structure data | |
---|---|
Similar structure data |
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
2 |
| ||||||||
3 |
| ||||||||
4 |
| ||||||||
5 |
| ||||||||
Unit cell |
| ||||||||
Components on special symmetry positions |
| ||||||||
Details | The biological assembly is a dimer of chain A and E, or B and F, or C and G, or D and H |
-Components
#1: Protein | Mass: 9928.076 Da / Num. of mol.: 4 / Fragment: CAP-Gly domain, residues 15-107 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: DCTN1 / Plasmid: pET15b / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: UniProt: Q14203 #2: Protein/peptide | Mass: 2928.173 Da / Num. of mol.: 4 / Fragment: second zinc finger domain, residues 1405-1427 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: RSN, CYLN1 / Plasmid: pGEX-4T1 / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: UniProt: P30622 #3: Chemical | ChemComp-ZN / #4: Water | ChemComp-HOH / | |
---|
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
---|
-Sample preparation
Crystal | Density Matthews: 2.54 Å3/Da / Density % sol: 51.48 % |
---|---|
Crystal grow | Temperature: 298 K / Method: vapor diffusion, sitting drop / pH: 7 Details: 4M sodium formate, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction source | Source: SYNCHROTRON / Site: APS / Beamline: 19-BM / Wavelength: 0.9791, 1.2826, 1.2830, 1.2694 | |||||||||||||||
Detector | Type: CUSTOM-MADE / Detector: CCD / Date: Jun 5, 2005 | |||||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||||||||
Radiation wavelength |
| |||||||||||||||
Reflection | Resolution: 1.8→45.7 Å / Num. all: 48867 / Num. obs: 49011 / % possible obs: 100 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Biso Wilson estimate: 14 Å2 | |||||||||||||||
Reflection shell | Resolution: 1.8→1.86 Å / % possible all: 100 |
-Processing
Software |
| |||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: MAD / Resolution: 1.8→45.68 Å / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
| |||||||||||||||||||||||||
Displacement parameters | Biso mean: 22.6 Å2
| |||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→45.68 Å
|