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Open data
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Basic information
Entry | Database: PDB / ID: 2fr2 | ||||||
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Title | Crystal Structure of Rv2717c from M. tuberculosis | ||||||
![]() | hypothetical protein Rv2717c | ||||||
![]() | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / BETA BARREL / fatty acid binding / PSI / Protein Structure Initiative / TB Structural Genomics Consortium / TBSGC | ||||||
Function / homology | ![]() peroxynitrite isomerase activity / Isomerases; Other isomerases / heme binding / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Hung, L.W. / TB Structural Genomics Consortium (TBSGC) | ||||||
![]() | ![]() Title: Crystal structure of Rv2717c from Mycobacterium tuberculosis Authors: Hung, L.W. / Yu, M. / Bursey, E.H. / Radhakannan, T. / Segelke, B.W. / Lekin, T. / Chang, Y.B. / Terwilliger, T.C. / Kaviratne, A. / Woodruff, T. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 44 KB | Display | ![]() |
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PDB format | ![]() | 33.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 423.3 KB | Display | ![]() |
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Full document | ![]() | 425.1 KB | Display | |
Data in XML | ![]() | 9.9 KB | Display | |
Data in CIF | ![]() | 13.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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2 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Details | The biological assembly is apparently a monomer |
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Components
#1: Protein | Mass: 18940.438 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.52 Å3/Da / Density % sol: 51.21 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, sitting drop / pH: 8.5 Details: PEG2000MME 18.714%, Na-K-Phosphate 0.1M, Isopropanol 9.394%, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Jun 30, 2005 |
Radiation | Monochromator: Si111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.5→50 Å / Num. all: 29018 / Num. obs: 28843 / % possible obs: 99.4 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 4.2 % / Biso Wilson estimate: 16 Å2 / Rmerge(I) obs: 0.055 / Net I/σ(I): 14 |
Reflection shell | Resolution: 1.5→1.55 Å / Redundancy: 3.2 % / Rmerge(I) obs: 0.416 / Mean I/σ(I) obs: 2 / Num. unique all: 2796 / % possible all: 96.3 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 18.436 Å2
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Refinement step | Cycle: LAST / Resolution: 1.5→40.32 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.504→1.543 Å / Total num. of bins used: 20
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Refinement TLS params. | Method: refined / Origin x: 5.631 Å / Origin y: 26.144 Å / Origin z: 17.029 Å
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