- PDB-2f86: The Association Domain of C. elegans CaMKII -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 2f86
Title
The Association Domain of C. elegans CaMKII
Components
Hypothetical protein K11E8.1d
Keywords
TRANSFERASE / unc-43 / oligomerization domain
Function / homology
Function and homology information
Unblocking of NMDA receptors, glutamate binding and activation / Ion transport by P-type ATPases / Ion homeostasis / medium-term memory / HSF1-dependent transactivation / Ca2+ pathway / serotonin biosynthetic process / Ca2+/calmodulin-dependent protein kinase / calcium/calmodulin-dependent protein kinase activity / axon cytoplasm ...Unblocking of NMDA receptors, glutamate binding and activation / Ion transport by P-type ATPases / Ion homeostasis / medium-term memory / HSF1-dependent transactivation / Ca2+ pathway / serotonin biosynthetic process / Ca2+/calmodulin-dependent protein kinase / calcium/calmodulin-dependent protein kinase activity / axon cytoplasm / MAPK cascade / perikaryon / transmembrane transporter binding / calmodulin binding / neuron projection / protein serine kinase activity / positive regulation of gene expression / ATP binding / identical protein binding / metal ion binding / cytoplasm Similarity search - Function
Calcium/calmodulin-dependent protein kinase II, association-domain / Calcium/calmodulin dependent protein kinase II association domain / Nuclear Transport Factor 2; Chain: A, - #50 / NTF2-like domain superfamily / Nuclear Transport Factor 2; Chain: A, / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Roll ...Calcium/calmodulin-dependent protein kinase II, association-domain / Calcium/calmodulin dependent protein kinase II association domain / Nuclear Transport Factor 2; Chain: A, - #50 / NTF2-like domain superfamily / Nuclear Transport Factor 2; Chain: A, / Serine/threonine-protein kinase, active site / Serine/Threonine protein kinases active-site signature. / Protein kinase domain / Serine/Threonine protein kinases, catalytic domain / Roll / Protein kinase, ATP binding site / Protein kinases ATP-binding region signature. / Protein kinase domain profile. / Protein kinase domain / Protein kinase-like domain superfamily / Alpha Beta Similarity search - Domain/homology
B: Hypothetical protein K11E8.1d D: Hypothetical protein K11E8.1d F: Hypothetical protein K11E8.1d H: Hypothetical protein K11E8.1d J: Hypothetical protein K11E8.1d L: Hypothetical protein K11E8.1d N: Hypothetical protein K11E8.1d
B: Hypothetical protein K11E8.1d D: Hypothetical protein K11E8.1d F: Hypothetical protein K11E8.1d H: Hypothetical protein K11E8.1d J: Hypothetical protein K11E8.1d L: Hypothetical protein K11E8.1d N: Hypothetical protein K11E8.1d
B: Hypothetical protein K11E8.1d D: Hypothetical protein K11E8.1d F: Hypothetical protein K11E8.1d H: Hypothetical protein K11E8.1d J: Hypothetical protein K11E8.1d L: Hypothetical protein K11E8.1d N: Hypothetical protein K11E8.1d
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi