+Open data
-Basic information
Entry | Database: PDB / ID: 2coy | ||||||
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Title | Solution structure of the CAP-Gly domain in human Dynactin 1 | ||||||
Components | Dynactin-1 | ||||||
Keywords | PROTEIN BINDING / microtubule binding / cytoskeleton associated protein / p150-glued / DAP-150 / structural genomics / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI | ||||||
Function / homology | Function and homology information positive regulation of neuromuscular junction development / centriolar subdistal appendage / cell cortex region / centriole-centriole cohesion / ventral spinal cord development / microtubule anchoring at centrosome / maintenance of synapse structure / melanosome transport / nuclear membrane disassembly / microtubule plus-end ...positive regulation of neuromuscular junction development / centriolar subdistal appendage / cell cortex region / centriole-centriole cohesion / ventral spinal cord development / microtubule anchoring at centrosome / maintenance of synapse structure / melanosome transport / nuclear membrane disassembly / microtubule plus-end / positive regulation of microtubule nucleation / XBP1(S) activates chaperone genes / dynein complex / COPI-independent Golgi-to-ER retrograde traffic / non-motile cilium assembly / retrograde transport, endosome to Golgi / nuclear migration / microtubule associated complex / motor behavior / neuromuscular process / neuromuscular junction development / intercellular bridge / cell leading edge / establishment of mitotic spindle orientation / Signaling by ALK fusions and activated point mutants / COPI-mediated anterograde transport / regulation of mitotic spindle organization / positive regulation of microtubule polymerization / Loss of Nlp from mitotic centrosomes / Loss of proteins required for interphase microtubule organization from the centrosome / Recruitment of mitotic centrosome proteins and complexes / Recruitment of NuMA to mitotic centrosomes / HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand / Anchoring of the basal body to the plasma membrane / MHC class II antigen presentation / neuron projection maintenance / centriole / tubulin binding / AURKA Activation by TPX2 / ciliary basal body / tau protein binding / mitotic spindle / spindle / kinetochore / spindle pole / neuron cellular homeostasis / microtubule cytoskeleton / Regulation of PLK1 Activity at G2/M Transition / mitotic cell cycle / nuclear envelope / nervous system development / cell cortex / microtubule binding / microtubule / neuron projection / cell division / axon / centrosome / neuronal cell body / protein kinase binding / membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Saito, K. / Koshiba, S. / Inoue, M. / Kigawa, T. / Yokoyama, S. / RIKEN Structural Genomics/Proteomics Initiative (RSGI) | ||||||
Citation | Journal: To be Published Title: Solution structure of the CAP-Gly domain in human Dynactin 1 Authors: Saito, K. / Koshiba, S. / Inoue, M. / Kigawa, T. / Yokoyama, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2coy.cif.gz | 635.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2coy.ent.gz | 552.1 KB | Display | PDB format |
PDBx/mmJSON format | 2coy.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/co/2coy ftp://data.pdbj.org/pub/pdb/validation_reports/co/2coy | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 11795.139 Da / Num. of mol.: 1 / Fragment: CAP-Gly domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Description: Cell-free protein synthesis / Gene: FB1898_A06 / Plasmid: P040816-05 / References: UniProt: Q14203 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 1mM protein, 20mM d-Tris-HCl, pH7.0, 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O Solvent system: 90% H2O/10% D2O |
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Sample conditions | Ionic strength: 120 / pH: 7.0 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 800 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |