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Open data
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Basic information
Entry | Database: PDB / ID: 2bmx | ||||||
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Title | Mycobacterium tuberculosis AhpC | ||||||
![]() | ALKYL HYDROPEROXIDASE C | ||||||
![]() | OXIDOREDUCTASE / PEROXIREDOXIN / ANTIOXIDANT DEFENSE SYSTEM / MYCOBACTERIUM TUBERCULOSIS / STRUCTURAL PROTEOMICS IN EUROPE / SPINE / STRUCTURAL GENOMICS | ||||||
Function / homology | ![]() lipoyl-dependent peroxiredoxin / hydroperoxide reductase activity / alkyl hydroperoxide reductase activity / Cell redox homeostasis / Tolerance of reactive oxygen produced by macrophages / Tolerance by Mtb to nitric oxide produced by macrophages / response to nitrosative stress / : / peroxiredoxin activity / thioredoxin peroxidase activity ...lipoyl-dependent peroxiredoxin / hydroperoxide reductase activity / alkyl hydroperoxide reductase activity / Cell redox homeostasis / Tolerance of reactive oxygen produced by macrophages / Tolerance by Mtb to nitric oxide produced by macrophages / response to nitrosative stress / : / peroxiredoxin activity / thioredoxin peroxidase activity / cell wall / cell redox homeostasis / peroxidase activity / response to oxidative stress / oxidoreductase activity / plasma membrane / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Guimaraes, B.G. / Alzari, P.M. | ||||||
![]() | ![]() Title: Structure and Mechanism of the Alkyl Hydroperoxidase Ahpc, a Key Element of the Mycobacterium Tuberculosis Defense System Against Oxidative Stress. Authors: Guimaraes, B.G. / Souchon, H. / Honore, N. / Saint-Joanis, B. / Brosch, R. / Shepard, W. / Cole, S.T. / Alzari, P.M. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 112.5 KB | Display | ![]() |
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PDB format | ![]() | 92.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 448.1 KB | Display | ![]() |
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Full document | ![]() | 461.9 KB | Display | |
Data in XML | ![]() | 24.5 KB | Display | |
Data in CIF | ![]() | 34.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 21663.902 Da / Num. of mol.: 3 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() References: UniProt: Q7BHK8, UniProt: P9WQB7*PLUS, peroxiredoxin #2: Water | ChemComp-HOH / | Compound details | ENGINEERED RESIDUE IN CHAIN A, CYS 176 TO SER ENGINEERED RESIDUE IN CHAIN B, CYS 176 TO SER ...ENGINEERED | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.9 Å3/Da / Density % sol: 57 % |
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Crystal grow | pH: 7 / Details: 0.1 M NA CITRATE, PH 6.0, 16% AMMONIUM SULPHATE |
-Data collection
Diffraction | Mean temperature: 110 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Jun 20, 2001 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9793 Å / Relative weight: 1 |
Reflection | Resolution: 2.4→30 Å / Num. obs: 33798 / % possible obs: 99.9 % / Observed criterion σ(I): 0 / Redundancy: 31.3 % / Rmerge(I) obs: 0.08 / Net I/σ(I): 6.5 |
Reflection shell | Resolution: 2.4→2.53 Å / Redundancy: 31.2 % / Rmerge(I) obs: 0.39 / Mean I/σ(I) obs: 1.9 / % possible all: 99.9 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 40.01 Å2
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Refinement step | Cycle: LAST / Resolution: 2.4→141.42 Å
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