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Yorodumi- PDB-2a51: Structure of the (13-51) domain of the nucleocapsid protein NCp8 ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2a51 | ||||||
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Title | Structure of the (13-51) domain of the nucleocapsid protein NCp8 from SIVlhoest | ||||||
Components | nucleocapsid protein | ||||||
Keywords | VIRAL PROTEIN / METAL BINDING PROTEIN / SIVlhoest / NCp8 / nucleocapsid | ||||||
Function / homology | Function and homology information viral process / viral nucleocapsid / host cell cytoplasm / host cell nucleus / structural molecule activity / RNA binding / zinc ion binding / nucleus / cytoplasm Similarity search - Function | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Morellet, N. / Meudal, H. / Bouaziz, S. / Roques, B.P. | ||||||
Citation | Journal: Biochem.J. / Year: 2006 Title: Structure of the zinc finger domain encompassing residues 13-51 of the nucleocapsid protein from simian immunodeficiency virus Authors: Morellet, N. / Meudal, H. / Bouaziz, S. / Roques, B.P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2a51.cif.gz | 235.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2a51.ent.gz | 195.9 KB | Display | PDB format |
PDBx/mmJSON format | 2a51.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2a51_validation.pdf.gz | 331.4 KB | Display | wwPDB validaton report |
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Full document | 2a51_full_validation.pdf.gz | 395.6 KB | Display | |
Data in XML | 2a51_validation.xml.gz | 11.7 KB | Display | |
Data in CIF | 2a51_validation.cif.gz | 21.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/a5/2a51 ftp://data.pdbj.org/pub/pdb/validation_reports/a5/2a51 | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 4476.203 Da / Num. of mol.: 1 / Fragment: zinc finger domain / Source method: obtained synthetically Details: This sequence occurs naturally in SIV(Simian immunodeficiency virus) References: UniProt: Q9Q0A3*PLUS |
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#2: Chemical |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques |
-Sample preparation
Details | Contents: 1mM (13-51)NCp7 / Solvent system: 90% H2O/10% D2O |
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Sample conditions | pH: 6.0 / Pressure: ambient / Temperature: 293 K |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: the structures are based on a total of 474 NOE-derived distance constraints | ||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |