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Yorodumi- PDB-295d: CRYSTAL AND SOLUTION STRUCTURES OF THE OLIGONUCLEOTIDE D(ATGCGCAT... -
+Open data
-Basic information
Entry | Database: PDB / ID: 295d | ||||||||||||||||||
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Title | CRYSTAL AND SOLUTION STRUCTURES OF THE OLIGONUCLEOTIDE D(ATGCGCAT)2: A COMBINED X-RAY AND NMR STUDY | ||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / A-DNA / DOUBLE HELIX | Function / homology | DNA | Function and homology information Method | X-RAY DIFFRACTION / Resolution: 1.5 Å | Authors | Clark, G.R. / Brown, D.G. / Sanderson, M.R. / Chwalinski, T. / Neidle, S. / Veal, J.M. / Jones, R.L. / Wilson, W.D. / Zon, G. / Garman, E. / Stuart, D.I. | Citation | Journal: Nucleic Acids Res. / Year: 1990 | Title: Crystal and solution structures of the oligonucleotide d(ATGCGCAT)2: a combined X-ray and NMR study. Authors: Clark, G.R. / Brown, D.G. / Sanderson, M.R. / Chwalinski, T. / Neidle, S. / Veal, J.M. / Jones, R.L. / Wilson, W.D. / Zon, G. / Garman, E. / Stuart, D.I. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 295d.cif.gz | 12.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb295d.ent.gz | 7.2 KB | Display | PDB format |
PDBx/mmJSON format | 295d.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 295d_validation.pdf.gz | 311.2 KB | Display | wwPDB validaton report |
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Full document | 295d_full_validation.pdf.gz | 312.8 KB | Display | |
Data in XML | 295d_validation.xml.gz | 1.5 KB | Display | |
Data in CIF | 295d_validation.cif.gz | 2.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/95/295d ftp://data.pdbj.org/pub/pdb/validation_reports/95/295d | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 2426.617 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.31 Å3/Da / Density % sol: 46.68 % | ||||||||||||
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Crystal grow | Method: vapor diffusion, hanging drop / Details: VAPOR DIFFUSION, HANGING DROP | ||||||||||||
Components of the solutions |
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Crystal grow | *PLUS | ||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Source: ROTATING ANODE |
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Detector | Type: XENTRONICS / Detector: AREA DETECTOR |
Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
-Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
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Refinement | Rfactor obs: 0.177 / Highest resolution: 1.5 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.5 Å
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Refinement | *PLUS Highest resolution: 1.5 Å | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |