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- PDB-200d: STABLE LOOP IN THE CRYSTAL STRUCTURE OF THE INTERCALATED FOUR-STR... -
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Open data
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Basic information
Entry | Database: PDB / ID: 200d | ||||||||||||||||||
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Title | STABLE LOOP IN THE CRYSTAL STRUCTURE OF THE INTERCALATED FOUR-STRANDED CYTOSINE-RICH METAZOAN TELOMERE | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / U-DNA / QUADRUPLE HELIX / TETRAPLEX / BASE INTERCALATED / LOOP | Function / homology | DNA | ![]() Method | ![]() ![]() Kang, C. / Berger, I. / Lockshin, C. / Ratliff, R. / Moyzis, R. / Rich, A. | ![]() ![]() Title: Stable loop in the crystal structure of the intercalated four-stranded cytosine-rich metazoan telomere. Authors: Kang, C. / Berger, I. / Lockshin, C. / Ratliff, R. / Moyzis, R. / Rich, A. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 15.9 KB | Display | ![]() |
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PDB format | ![]() | 10.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 321.9 KB | Display | ![]() |
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Full document | ![]() | 331.4 KB | Display | |
Data in XML | ![]() | 2.4 KB | Display | |
Data in CIF | ![]() | 3.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: DNA chain | Mass: 1753.194 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.33 Å3/Da / Density % sol: 47.3 % | |||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Method: vapor diffusion / pH: 6 / Details: pH 6.00, VAPOR DIFFUSION | |||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS pH: 6 / Method: unknown | |||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 277 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE / Date: Jul 20, 1994 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Rmerge(I) obs: 0.045 |
Reflection | *PLUS % possible obs: 77 % |
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Processing
Software |
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Refinement | Resolution: 1.85→12 Å / σ(F): 1
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Refinement step | Cycle: LAST / Resolution: 1.85→12 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1.85 Å / Lowest resolution: 12 Å / σ(F): 1 / Rfactor obs: 0.19 / Rfactor Rwork: 0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |