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Yorodumi- PDB-1z9v: Solution Structure of MTH0776 from Methanobacterium thermoautotro... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1z9v | ||||||
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Title | Solution Structure of MTH0776 from Methanobacterium thermoautotrophicum (strain H) | ||||||
Components | conserved hypothetical protein MTH0776 | ||||||
Keywords | UNKNOWN FUNCTION / Solution Structure / Archaeabacterium | ||||||
Function / homology | MTH0776-like / Domain of unknown function (DUF1894) / : / Conserved protein Function and homology information | ||||||
Biological species | Methanothermobacter thermautotrophicus (archaea) | ||||||
Method | SOLUTION NMR / simulated annealing protocol in XPLOR-NIH | ||||||
Authors | Amegbey, G. / Stothard, P. / Iakounine, A. / Yee, A. / Arrowsmith, C.H. / Wishart, D.S. | ||||||
Citation | Journal: J.Biomol.Nmr / Year: 2005 Title: Solution Structure of MTH0776 from Methanobacterium Thermoautotrophicum. Authors: Amegbey, G. / Stothard, P. / Kuznetsova, E. / Yee, A. / Arrowsmith, C.H. / Wishart, D.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1z9v.cif.gz | 635.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1z9v.ent.gz | 528.3 KB | Display | PDB format |
PDBx/mmJSON format | 1z9v.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1z9v_validation.pdf.gz | 346.1 KB | Display | wwPDB validaton report |
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Full document | 1z9v_full_validation.pdf.gz | 477.5 KB | Display | |
Data in XML | 1z9v_validation.xml.gz | 33.2 KB | Display | |
Data in CIF | 1z9v_validation.cif.gz | 56.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/z9/1z9v ftp://data.pdbj.org/pub/pdb/validation_reports/z9/1z9v | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 13583.732 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Methanothermobacter thermautotrophicus (archaea) Strain: Delta H / Gene: MTH776 / Plasmid: pET15b / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: GenBank: 2621867, UniProt: O26870*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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NMR details | Text: The structure was determined using triple-resonance NMR spectroscopy. |
-Sample preparation
Details |
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Sample conditions |
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-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing protocol in XPLOR-NIH / Software ordinal: 1 Details: The structures are based on a total of 2048 restraints, 1844 are NOE-derived distance constraints, 164 dihedral angle restraints, 40 distance restraints from hydrogen bonds. | ||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 60 / Conformers submitted total number: 20 |