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- PDB-1xso: THREE-DIMENSIONAL STRUCTURE OF XENOPUS LAEVIS CU,ZN SUPEROXIDE DI... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1xso | ||||||
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Title | THREE-DIMENSIONAL STRUCTURE OF XENOPUS LAEVIS CU,ZN SUPEROXIDE DISMUTASE B DETERMINED BY X-RAY CRYSTALLOGRAPHY AT 1.5 ANGSTROMS RESOLUTION | ||||||
![]() | COPPER,ZINC SUPEROXIDE DISMUTASE | ||||||
![]() | OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR) | ||||||
Function / homology | ![]() superoxide dismutase / superoxide dismutase activity / nucleus / metal ion binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Djinovic Carugo, K. / Coda, A. / Battistoni, A. / Carri, M.T. / Polticelli, F. / Desideri, A. / Rotilio, G. / Wilson, K.S. / Bolognesi, M. | ||||||
![]() | ![]() Title: Three-dimensional structure of Xenopus laevis Cu,Zn superoxide dismutase b determined by X-ray crystallography at 1.5 A resolution. Authors: Djinovic Carugo, K. / Battistoni, A. / Carri, M.T. / Polticelli, F. / Desideri, A. / Rotilio, G. / Coda, A. / Wilson, K.S. / Bolognesi, M. #1: ![]() Title: Conserved Patterns in the Cu,Zn Superoxide Dismutase Family Authors: Bordo, D. / Djinovic, K. / Bolognesi, K.M. #2: ![]() Title: Crystallographic Study of Azide-Inhibited Bovine Cu,Zn Superoxide Dismutase Authors: Djinovic Carugo, K. / Polticelli, K.F. / Desideri, A. / Rotilio, G. / Wilson, K.S. / Bolognesi, M. #3: ![]() Title: Crystal Structure of the Cyanide-Inhibited Xenopus Laevis Cu,Zn Superoxide Dismutase at 98 K Authors: Djinovic Carugo, K. / Battistoni, K.A. / Carri, M.T. / Polticelli, F. / Desideri, A. / Rotilio, G. / Coda, A. / Bolognesi, M. #4: ![]() Title: Crystallisation and Preliminary Crystallographic Analysis of Recombinant Xenopus Laevis Cu,Zn Superoxide Dismutase B Authors: Djinovic Carugo, K. / Collyer, K.C. / Coda, A. / Carri, M.T. / Battistoni, A. / Botaro, G. / Polticelli, F. / Desideri, A. / Bolognesi, M. #5: ![]() Title: Crystal Structure of Yeast Cu,Zn Superoxide Dismutase Authors: Djinovic, K. / Gatti, G. / Antolini, L. / Pelosi, G. / Desideri, A. / Falconi, M. / Marmocchi, F. / Rotilio, G. / Bolognesi, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 72.7 KB | Display | ![]() |
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PDB format | ![]() | 57.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 368.4 KB | Display | ![]() |
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Full document | ![]() | 368.8 KB | Display | |
Data in XML | ![]() | 6.9 KB | Display | |
Data in CIF | ![]() | 12.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.98783, -0.01029, -0.15522), Vector: Details | MTRIX THE TRANSFORMATIONS PRESENTED ON MTRIX RECORDS BELOW DESCRIBE NON-CRYSTALLOGRAPHIC RELATIONSHIPS AMONG THE VARIOUS DOMAINS IN THIS ENTRY. APPLYING THE APPROPRIATE MTRIX TRANSFORMATION TO THE RESIDUES LISTED FIRST WILL YIELD APPROXIMATE COORDINATES FOR THE RESIDUES LISTED SECOND. APPLIED TO TRANSFORMED TO MTRIX RESIDUES RESIDUES RMSD M1 A 2 .. A 151 B 2 .. B 151 0.279 CALCULATED FOR C-ALPHA ATOMS | |
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Components
#1: Protein | Mass: 15306.876 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Chemical | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.43 Å3/Da / Density % sol: 49.36 % | ||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 301 K / pH: 6 / Method: vapor diffusion, sitting drop | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Source: ![]() ![]() ![]() |
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Detector | Type: CUSTOM-MADE / Detector: IMAGE PLATE / Date: Aug 18, 1993 |
Radiation | Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.92 Å / Relative weight: 1 |
Reflection | Num. obs: 49209 / % possible obs: 98.8 % / Observed criterion σ(I): 1 / Redundancy: 4.98 % / Rmerge(I) obs: 0.078 |
Reflection | *PLUS Highest resolution: 1.49 Å / Num. measured all: 245181 / Rmerge(I) obs: 0.078 |
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Processing
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Refinement | Resolution: 1.49→10 Å / σ(F): 0 / Details: RESIDUE 24 IS IN POOR ELECTRON DENSITY.
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Displacement parameters | Biso mean: 20.3 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.49→10 Å
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Refine LS restraints |
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Refine LS restraints | *PLUS
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