Entry | Database: PDB / ID: 1xpr |
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Title | Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (FB) |
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Components | - 5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3'
- Rho transcription termination factor
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Keywords | TRANSCRIPTION/RNA / Rho / 5a-formylbicyclomycin / FB / ATPgammaS / TRANSCRIPTION-RNA COMPLEX |
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Function / homology | Function and homology information
methane monooxygenase (soluble) / methane monooxygenase NADH activity / methane monooxygenase NADPH activity / cellular aromatic compound metabolic process / ATP-dependent activity, acting on RNA / helicase activity / DNA-templated transcription termination / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / one-carbon metabolic process / ATP hydrolysis activity ...methane monooxygenase (soluble) / methane monooxygenase NADH activity / methane monooxygenase NADPH activity / cellular aromatic compound metabolic process / ATP-dependent activity, acting on RNA / helicase activity / DNA-templated transcription termination / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / one-carbon metabolic process / ATP hydrolysis activity / RNA binding / ATP binding / membrane / identical protein binding / metal ion binding / cytosolSimilarity search - Function Transcription termination factor Rho / Rho termination factor, N-terminal / Rho termination factor, RNA-binding domain / Transcription termination factor Rho, ATP binding domain / Rho termination factor, RNA-binding domain / Rho termination factor, N-terminal domain / Rho RNA-binding domain profile. / Rho termination factor, N-terminal domain / Rho termination factor, N-terminal domain superfamily / Propane/methane/phenol/toluene hydroxylase ...Transcription termination factor Rho / Rho termination factor, N-terminal / Rho termination factor, RNA-binding domain / Transcription termination factor Rho, ATP binding domain / Rho termination factor, RNA-binding domain / Rho termination factor, N-terminal domain / Rho RNA-binding domain profile. / Rho termination factor, N-terminal domain / Rho termination factor, N-terminal domain superfamily / Propane/methane/phenol/toluene hydroxylase / Methane/Phenol/Alkene Hydroxylase / Cold shock domain / Cold shock protein domain / Ribonucleotide reductase-like / ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain / ATP synthase alpha/beta family, nucleotide-binding domain / Nucleic acid-binding proteins / Ferritin-like superfamily / OB fold (Dihydrolipoamide Acetyltransferase, E2P) / P-loop containing nucleotide triphosphate hydrolases / ATPases associated with a variety of cellular activities / AAA+ ATPase domain / Nucleic acid-binding, OB-fold / Beta Barrel / P-loop containing nucleoside triphosphate hydrolase / Rossmann fold / 3-Layer(aba) Sandwich / Mainly Beta / Alpha BetaSimilarity search - Domain/homology PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER / 5A-FORMYLBICYCLOMYCIN / RNA / Transcription termination factor Rho / Methane monooxygenase component A alpha chainSimilarity search - Component |
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Biological species | Escherichia coli (E. coli) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.15 Å |
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Authors | Skordalakes, E. / Brogan, A.P. / Park, B.S. / Kohn, H. / Berger, J.M. |
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Citation | Journal: Structure / Year: 2005 Title: Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin Authors: Skordalakes, E. / Brogan, A.P. / Park, B.S. / Kohn, H. / Berger, J.M. |
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History | Deposition | Oct 9, 2004 | Deposition site: RCSB / Processing site: RCSB |
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Revision 1.0 | Nov 2, 2004 | Provider: repository / Type: Initial release |
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Revision 1.1 | Apr 30, 2008 | Group: Version format compliance |
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Revision 1.2 | Jul 13, 2011 | Group: Advisory / Version format compliance |
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Revision 1.3 | Feb 14, 2024 | Group: Data collection / Database references / Derived calculations Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_struct_conn_angle / struct_conn / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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