Entry Database : PDB / ID : 1xpu Structure visualization Downloads & linksTitle Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (FPDB) Components5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3'Rho transcription termination factor DetailsKeywords TRANSCRIPTION/RNA / Rho transcription termination factor / 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (FPDB) / ATPgammaS / TRANSCRIPTION-RNA COMPLEXFunction / homology Function and homology informationFunction Domain/homology Component
methane monooxygenase (soluble) / methane monooxygenase [NAD(P)H] activity / ATP-dependent activity, acting on RNA / one-carbon metabolic process / helicase activity / DNA-templated transcription termination / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / ATP hydrolysis activity / RNA binding / ATP binding ... methane monooxygenase (soluble) / methane monooxygenase [NAD(P)H] activity / ATP-dependent activity, acting on RNA / one-carbon metabolic process / helicase activity / DNA-templated transcription termination / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / ATP hydrolysis activity / RNA binding / ATP binding / metal ion binding / identical protein binding / membrane / cytosol Similarity search - Function Propane/methane/phenol/toluene hydroxylase / Methane/Phenol/Alkene Hydroxylase / Transcription termination factor Rho / Rho termination factor, N-terminal / Rho termination factor, RNA-binding domain / Transcription termination factor Rho, ATP binding domain / Rho termination factor, RNA-binding domain / Rho termination factor, N-terminal domain / Rho RNA-binding domain profile. / Rho termination factor, N-terminal domain ... Propane/methane/phenol/toluene hydroxylase / Methane/Phenol/Alkene Hydroxylase / Transcription termination factor Rho / Rho termination factor, N-terminal / Rho termination factor, RNA-binding domain / Transcription termination factor Rho, ATP binding domain / Rho termination factor, RNA-binding domain / Rho termination factor, N-terminal domain / Rho RNA-binding domain profile. / Rho termination factor, N-terminal domain / Rho termination factor, N-terminal domain superfamily / Cold shock domain / Cold shock protein domain / Ribonucleotide reductase-like / ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain / ATP synthase alpha/beta family, nucleotide-binding domain / Nucleic acid-binding proteins / Ferritin-like superfamily / OB fold (Dihydrolipoamide Acetyltransferase, E2P) / P-loop containing nucleotide triphosphate hydrolases / Nucleic acid-binding, OB-fold / ATPases associated with a variety of cellular activities / AAA+ ATPase domain / Beta Barrel / Rossmann fold / P-loop containing nucleoside triphosphate hydrolase / 3-Layer(aba) Sandwich / Mainly Beta / Alpha Beta Similarity search - Domain/homology PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER / 5A-(3-FORMYLPHENYLSULFANYL)-DIHYDROBICYCLOMYCIN / RNA / Transcription termination factor Rho / Methane monooxygenase component A alpha chain Similarity search - ComponentBiological species Escherichia coli (E. coli)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 3.05 Å DetailsAuthors Skordalakes, E. / Brogan, A.P. / Park, B.S. / Kohn, H. / Berger, J.M. CitationJournal : Structure / Year : 2005Title : Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycinAuthors : Skordalakes, E. / Brogan, A.P. / Park, B.S. / Kohn, H. / Berger, J.M. History Deposition Oct 9, 2004 Deposition site : RCSB / Processing site : RCSBRevision 1.0 Nov 2, 2004 Provider : repository / Type : Initial releaseRevision 1.1 Apr 30, 2008 Group : Version format complianceRevision 1.2 Jul 13, 2011 Group : Advisory / Version format complianceRevision 1.3 Dec 25, 2024 Group : Advisory / Data collection ... Advisory / Data collection / Database references / Derived calculations / Structure summary Category : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / pdbx_entry_details / pdbx_struct_conn_angle / pdbx_validate_close_contact / struct_conn / struct_conn_type / struct_site Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession ... _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id
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