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- PDB-1xbf: X-RAY STRUCTURE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET C... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1xbf | ||||||
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Title | X-RAY STRUCTURE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CAR10 FROM C. ACETOBUTYLICUM | ||||||
![]() | Clostridium acetobutylicum Q97KL0 | ||||||
![]() | STRUCTURAL GENOMICS / UNKNOWN FUNCTION / CAR10 / Q97KL0 / PROTEIN STRUCTURE INITIATIVE / NESG / PSI / Northeast Structural Genomics Consortium | ||||||
Function / homology | Uncharacterized protein family UPF0047 signature. / YjbQ-like / Uncharacterised protein family UPF0047, YjbQ / YjbQ-like superfamily / Uncharacterised protein family UPF0047 / Jelly Rolls / Sandwich / Mainly Beta / Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Kuzin, A.P. / Chen, Y. / Vorobiev, S. / Yong, W. / Acton, T. / Ho, C.-K. / Conover, K. / Cooper, B. / Ciano, M. / Xiao, R. ...Kuzin, A.P. / Chen, Y. / Vorobiev, S. / Yong, W. / Acton, T. / Ho, C.-K. / Conover, K. / Cooper, B. / Ciano, M. / Xiao, R. / Montelione, G. / Tong, L. / Hunt, J. / Northeast Structural Genomics Consortium (NESG) | ||||||
![]() | ![]() Title: X-RAY STRUCTURE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET CAR10 FROM C. ACETOBUTYLICUM Authors: Kuzin, A.P. / Chen, Y. / Vorobiev, S. / Yong, W. / Acton, T. / Ho, C.-K. / Conover, K. / Cooper, B. / Ciano, M. / Xiao, R. / Montelione, G. / Tong, L. / Hunt, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 83.9 KB | Display | ![]() |
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PDB format | ![]() | 69 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 15779.571 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() #2: Chemical | ChemComp-SO4 / #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.98 Å3/Da / Density % sol: 38 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: 1.6 M Ammonium Sulfate, 0.1 M MES, 10% Dioxane, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Aug 21, 2004 |
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97903 Å / Relative weight: 1 |
Reflection | Resolution: 2→30 Å / Num. all: 90139 / Num. obs: 47396 / % possible obs: 92.5 % / Observed criterion σ(I): -3 / Redundancy: 1.9 % / Biso Wilson estimate: 25.2 Å2 / Rsym value: 0.052 / Net I/σ(I): 12.1 |
Reflection shell | Resolution: 2→2.07 Å / Mean I/σ(I) obs: 3.88 / Num. unique all: 4697 / Rsym value: 0.218 / % possible all: 98.6 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 54.788 Å2 / ksol: 0.402676 e/Å3 | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 31.1 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2→19.63 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2→2.13 Å / Rfactor Rfree error: 0.017 / Total num. of bins used: 6
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Xplor file |
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