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Yorodumi- PDB-1wil: Solution Structure of the RING Finger Domain of the Human KIAA104... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1wil | ||||||
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Title | Solution Structure of the RING Finger Domain of the Human KIAA1045 Protein | ||||||
Components | KIAA1045 protein | ||||||
Keywords | Structural genomics / unknown function / RING finger domain / KIAA1045 protein / RIKEN Structural Genomics/Proteomics Initiative / RSGI | ||||||
Function / homology | Function and homology information regulation of G protein-coupled receptor signaling pathway / gamma-aminobutyric acid signaling pathway / regulation of synaptic transmission, GABAergic / detection of mechanical stimulus involved in sensory perception of pain / transcription corepressor activity / nucleus / metal ion binding / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Authors | Miyamoto, K. / Tochio, N. / Koshiba, S. / Inoue, M. / Kigawa, T. / Yokoyama, S. / RIKEN Structural Genomics/Proteomics Initiative (RSGI) | ||||||
Citation | Journal: To be Published Title: Solution Structure of the RING Finger Domain of the Human KIAA1045 Protein Authors: Miyamoto, K. / Tochio, N. / Koshiba, S. / Inoue, M. / Kigawa, T. / Yokoyama, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1wil.cif.gz | 502.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1wil.ent.gz | 418.1 KB | Display | PDB format |
PDBx/mmJSON format | 1wil.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1wil_validation.pdf.gz | 343.6 KB | Display | wwPDB validaton report |
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Full document | 1wil_full_validation.pdf.gz | 479.4 KB | Display | |
Data in XML | 1wil_validation.xml.gz | 30.8 KB | Display | |
Data in CIF | 1wil_validation.cif.gz | 48.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/wi/1wil ftp://data.pdbj.org/pub/pdb/validation_reports/wi/1wil | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 9684.684 Da / Num. of mol.: 1 / Fragment: RING Finger Domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Description: Cell-free protein synthesis / Gene: KAZUSA cDNA hh00656 / Plasmid: P030609-29 / References: UniProt: Q9UPV7 |
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#2: Chemical |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 0.4mM RING finger Domain U-13C,15N; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 0.1mM ZnCl2; 1O% D2O Solvent system: 90% H2O/10% D2O |
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Sample conditions | Ionic strength: 120mM / pH: 7.0 / Pressure: ambient / Temperature: 296 K |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 800 MHz |
-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations, structures with the lowest energy, target function Conformers calculated total number: 100 / Conformers submitted total number: 20 |