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- PDB-1w2q: allergen arah6 from peanut (Arachis hypogaea) -

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Basic information

Entry
Database: PDB / ID: 1w2q
Titleallergen arah6 from peanut (Arachis hypogaea)
ComponentsCONGLUTIN
KeywordsALLERGEN / ALLERGENE
Function / homology
Function and homology information


nutrient reservoir activity / IgE binding
Similarity search - Function
Napin/ 2S seed storage protein/Conglutin / Plant lipid-transfer and hydrophobic proteins / Hydrophobic Seed Protein / Protease inhibitor/seed storage/LTP family / Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family / Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain / Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily / Orthogonal Bundle / Mainly Alpha
Similarity search - Domain/homology
Conglutin / Conglutin
Similarity search - Component
Biological speciesARACHIS HYPOGAEA (peanut)
MethodSOLUTION NMR / RESTRAINT MOLECULAR DYNAMICS
AuthorsLehmann, K. / Schweimer, K. / Roesch, P.
CitationJournal: Biochem.J. / Year: 2006
Title: Structure and Stability of 2S Albumin-Type Peanut Allergens: Implications for the Severity of Peanut Allergic Reactions.
Authors: Lehmann, K. / Schweimer, K. / Reese, G. / Randow, S. / Suhr, M. / Becker, W. / Vieths, S. / Roesch, P.
History
DepositionJul 8, 2004Deposition site: PDBE / Processing site: PDBE
Revision 1.0Nov 2, 2005Provider: repository / Type: Initial release
Revision 1.1May 8, 2011Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Oct 16, 2024Group: Data collection / Database references ...Data collection / Database references / Other / Structure summary
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_database_status / pdbx_entry_details / pdbx_modification_feature / pdbx_nmr_software
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.status_code_mr / _pdbx_nmr_software.name

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: CONGLUTIN


Theoretical massNumber of molelcules
Total (without water)14,9801
Polymers14,9801
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)14 / -LEAST RESTRAINT VIOLATION
RepresentativeModel #1

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Components

#1: Protein CONGLUTIN / ARA H 6


Mass: 14979.747 Da / Num. of mol.: 1 / Fragment: RESIDUES 21-144
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) ARACHIS HYPOGAEA (peanut) / Tissue: SEED / Plasmid: PET32A/ARAH6 / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): ORIGAMI (DE3) / References: UniProt: Q8W251, UniProt: Q647G9*PLUS
Has protein modificationY

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR
NMR experiment
Conditions-IDExperiment-IDSolution-IDType
1113D-15N NOESY
1213D-13C NOESY
1313D (13C
14115N) HMQC-NOESY-HSQC
1513D HNHA
NMR detailsText: THE STRUCTURE WAS DETERMINED USING MULTIDIMENSIONAL NMR SPECTROSCOPY ON 13C,15N LABELED ARA H 6

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Sample preparation

Sample conditionspH: 7 / Temperature: 298 K

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NMR measurement

NMR spectrometer
TypeManufacturerModelField strength (MHz)Spectrometer-ID
Bruker DRXBrukerDRX6001
Bruker DMXBrukerDMX7502

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Processing

NMR software
NameVersionDeveloperClassification
X-PLOR3.851BRUNGERrefinement
X-PLOR3.8.5.1structure solution
RefinementMethod: RESTRAINT MOLECULAR DYNAMICS / Software ordinal: 1
NMR ensembleConformer selection criteria: LEAST RESTRAINT VIOLATION / Conformers submitted total number: 14

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