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Yorodumi- PDB-1vtb: THE HEXAGONAL CRYSTAL STRUCTURE OF THE A-DNA OCTAMER D(GTGTACAC) ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1vtb | ||||||||||||||||||
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Title | THE HEXAGONAL CRYSTAL STRUCTURE OF THE A-DNA OCTAMER D(GTGTACAC) AND ITS COMPARISON WITH THE TETRAGONAL STRUCTURE CORRELATED VARIATIONS IN HELICAL PARAMETERS | ||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / A-DNA / DOUBLE HELIX | Function / homology | DNA | Function and homology information Method | X-RAY DIFFRACTION / Resolution: 2 Å | Authors | Jain, S.C. / Zon, G. / Sundaralingam, M. | Citation | Journal: Biochemistry / Year: 1991 Title: The Hexagonal Crystal Structure of the A-DNA Octamer d(GTGTACAC) and Its Comparison with the Tetragonal Structure Correlated Variations in Helical Parameters Authors: Jain, S.C. / Zon, G. / Sundaralingam, M. #1: Journal: J.Biol.Chem. / Year: 1989 Title: Effect of Crystal Packing Environment on Conformation of the DNA Duplex Authors: Jain, S. / Sundaralingam, M. #2: Journal: Biochemistry / Year: 1989 Title: Base Only Binding of Spermine in the Deep Groove of the A-DNA Octamer d(GTGTACAC) Authors: Jain, S. / Zon, G. / Sundaralingam, M. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1vtb.cif.gz | 14.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1vtb.ent.gz | 8.3 KB | Display | PDB format |
PDBx/mmJSON format | 1vtb.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1vtb_validation.pdf.gz | 312.7 KB | Display | wwPDB validaton report |
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Full document | 1vtb_full_validation.pdf.gz | 315.1 KB | Display | |
Data in XML | 1vtb_validation.xml.gz | 1.6 KB | Display | |
Data in CIF | 1vtb_validation.cif.gz | 2.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vt/1vtb ftp://data.pdbj.org/pub/pdb/validation_reports/vt/1vtb | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 2426.617 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.47 Å3/Da / Density % sol: 50.29 % | |||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 278 K / Method: vapor diffusion / Details: VAPOR DIFFUSION, temperature 278.00K | |||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Diffraction source | Source: ROTATING ANODE |
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Detector | Type: ARNDT-WONACOTT / Detector: OSCILLATION CAMERA |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 2 Å / Num. all: 8156 / Num. obs: 1683 / Observed criterion σ(I): 1.5 |
-Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
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Refinement | Highest resolution: 2 Å / σ(I): 1.5 /
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Refinement step | Cycle: LAST / Highest resolution: 2 Å
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