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Open data
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Basic information
Entry | Database: PDB / ID: 1vt7 | ||||||||||||||||||
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Title | Structures of the mismatched duplex D(GGGTGCCC) | ||||||||||||||||||
![]() | DNA (5'-D(*![]() ![]() ![]() ![]() ![]() Function / homology | ![]() ![]() Method | ![]() ![]() Rabinovich, D. / Haran, T. / Eisenstein, M. / Shakked, Z. | ![]() ![]() Title: Structures of the mismatched duplex d(GGGTGCCC) and one of its Watson-Crick analogues d(GGGCGCCC). Authors: Rabinovich, D. / Haran, T. / Eisenstein, M. / Shakked, Z. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 16.8 KB | Display | ![]() |
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PDB format | ![]() | 10.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: DNA chain | Mass: 2443.604 Da / Num. of mol.: 2 / Source method: obtained synthetically / Details: synthetic oligomer #2: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.52 Å3/Da / Density % sol: 51.18 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow![]() | Temperature: 277 K / Method: vapor diffusion / pH: 7 Details: MPD, MgCl2, spermine, sodium cacodylate, pH 7.00, VAPOR DIFFUSION, temperature 277.00K | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Diffraction | Ambient temp details: ROOM TEMPERATURE |
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Diffraction source | Wavelength: 1.5418 |
Detector | Type: NONIUS CAD4 / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Highest resolution: 2.5 Å / Num. obs: 2000 |
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Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
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Refinement | Highest resolution: 2.5 Å / σ(F): 2 /
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Refinement step | Cycle: LAST / Highest resolution: 2.5 Å
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