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Open data
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Basic information
Entry | Database: PDB / ID: 1vt8 | ||||||||||||||||||
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Title | Crystal structure of D(GGGCGCCC)-hexagonal form | ||||||||||||||||||
![]() | DNA (5'-D(*![]() ![]() ![]() ![]() Function / homology | ![]() ![]() Method | ![]() ![]() Shakked, Z. / Guerstein-Guzikevich, G. / Eisenstein, M. / Frolow, F. / Rabinovich, D. | ![]() ![]() Title: The conformation of the DNA double helix in the crystal is dependent on its environment. Authors: Shakked, Z. / Guerstein-Guzikevich, G. / Eisenstein, M. / Frolow, F. / Rabinovich, D. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 19.6 KB | Display | ![]() |
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PDB format | ![]() | 12.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: DNA chain | Mass: 2428.593 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.35 Å3/Da / Density % sol: 47.57 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow![]() | Temperature: 292 K Details: MPD, Sodium Cacodylate, spermine, MgCl2, temperature 292K | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU AFC-5 / Detector: DIFFRACTOMETER |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 1.9 Å / Num. obs: 2827 / Observed criterion σ(F): 2 |
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Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||
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Refinement | Highest resolution: 1.9 Å / σ(F): 1.9 /
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Refine Biso |
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Refinement step | Cycle: LAST / Highest resolution: 1.9 Å
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