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- PDB-1vt5: THE CRYSTAL STRUCTURE OF D(CCCCGGGG): A NEW A-FORM VARIANT WITH A... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1vt5 | ||||||||||||||||||
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Title | THE CRYSTAL STRUCTURE OF D(CCCCGGGG): A NEW A-FORM VARIANT WITH AN EXTENDED BACKBONE CONFORMATION | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / A-DNA / DOUBLE HELIX | Function / homology | DNA | ![]() Method | ![]() ![]() Haran, T.E. / Shakked, Z. / Wang, A.H.-J. / Rich, A. | ![]() ![]() Title: The crystal structure of d(CCCCGGGG): a new A-form variant with an extended backbone conformation. Authors: Haran, T.E. / Shakked, Z. / Wang, A.H. / Rich, A. #1: ![]() Title: Molecular structure of the octamer d(G-G-C-C-G-G-C-C): modified A-DNA. Authors: Wang, A.H. / Fujii, S. / van Boom, J.H. / Rich, A. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 11.2 KB | Display | ![]() |
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PDB format | ![]() | 6.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 310.9 KB | Display | ![]() |
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Full document | ![]() | 310.8 KB | Display | |
Data in XML | ![]() | 1.1 KB | Display | |
Data in CIF | ![]() | 1.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: DNA chain | Mass: 2428.593 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: SYNTHESIZED DNA |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.4 Å3/Da / Density % sol: 48.81 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 7 / Details: MPD, Sodium Cacodylate, spermine, MgCl2, pH 7.00 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Diffraction |
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Diffraction source |
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Detector |
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Radiation |
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Radiation wavelength |
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Reflection | Highest resolution: 2.25 Å |
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Processing
Software | Name: CORELS / Classification: refinement | ||||||||||||
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Refinement | Resolution: 2.25→8 Å Details: REFERENCE 2 REPORTED A CELL OF 42.10, 42.10, 25.10 WITH SPACE GROUP OF P 43 21 2. THIS HAS SINCE BEEN CHANGED TO THE PRESENT CELL.
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Refine Biso | Class: ALL ATOMS / Details: TR / Treatment: isotropic | ||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.25→8 Å
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