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Yorodumi- PDB-1vj4: SEQUENCE-DEPENDENT CONFORMATION OF AN A-DNA DOUBLE HELIX: THE CRY... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1vj4 | ||||||||||||||||||
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Title | SEQUENCE-DEPENDENT CONFORMATION OF AN A-DNA DOUBLE HELIX: THE CRYSTAL STRUCTURE OF THE OCTAMER D(G-G-T-A-T-A-C-C) | ||||||||||||||||||
Components | 5'-D(*Keywords | DNA / A-DNA / DOUBLE HELIX | Function / homology | DNA | Function and homology information Method | X-RAY DIFFRACTION / Resolution: 1.8 Å | Authors | Shakked, Z. / Rabinovich, D. / Kennard, O. / Cruse, W.B. / Salisbury, S.A. / Viswamitra, M.A. | Citation | Journal: J.Mol.Biol. / Year: 1983 Title: Sequence-dependent conformation of an A-DNA double helix: The crystal structure of the octamer d(G-G-T-A-T-A-C-C) Authors: Shakked, Z. / Rabinovich, D. / Kennard, O. / Cruse, W.B. / Salisbury, S.A. / Viswamitra, M.A. #1: Journal: Proc.R.Soc.London,Ser.B / Year: 1981 Title: Crystalline A-DNA. The X-Ray Analysis of the Fragment d(G-G-T-A-T-A-C-C) Authors: Shakked, Z. / Rabinovich, D. / Cruse, W.B.T. / Egert, E. / Kennard, O. / Sala, G. / Salisbury, S.A. / Viswamitra, M.A. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1vj4.cif.gz | 15.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1vj4.ent.gz | 9.5 KB | Display | PDB format |
PDBx/mmJSON format | 1vj4.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vj/1vj4 ftp://data.pdbj.org/pub/pdb/validation_reports/vj/1vj4 | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 2426.617 Da / Num. of mol.: 2 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.42 Å3/Da / Density % sol: 49.09 % | ||||||||||||||||||||||||||||||||
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Crystal grow | Method: vapor diffusion / pH: 6.9 / Details: pH 6.90, VAPOR DIFFUSION | ||||||||||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Detector | Type: ENRAF-NONIUS CAD4 / Detector: DIFFRACTOMETER |
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Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
-Processing
Software | Name: CORELS / Classification: refinement | ||||||||||||
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Refinement | Resolution: 1.8→8 Å / σ(F): 1 /
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Refinement step | Cycle: LAST / Resolution: 1.8→8 Å
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