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Open data
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Basic information
Entry | Database: PDB / ID: 1vda | ||||||
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Title | Solution structure of FMBP-1 tandem repeat 4 | ||||||
![]() | Fibroin-modulator-binding-protein-1 | ||||||
![]() | TRANSCRIPTION / TANDEM REPEAT / N-CAP / DNA BINDING | ||||||
Function / homology | : / STPRs (score and three amino acid peptide repeats) / Fibroin-modulator-binding protein-1![]() | ||||||
Method | SOLUTION NMR / distance geometry simulated annealing | ||||||
![]() | Kawaguchi, K. / Yamaki, T. / Aizawa, T. / Takiya, S. / Demura, M. / Nitta, K. | ||||||
![]() | ![]() Title: Solution structure of FMBP-1 tandem repeat 4 Authors: Kawaguchi, K. / Yamaki, T. / Aizawa, T. / Takiya, S. / Demura, M. / Nitta, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 103.8 KB | Display | ![]() |
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PDB format | ![]() | 72.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 336.6 KB | Display | ![]() |
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Full document | ![]() | 395 KB | Display | |
Data in XML | ![]() | 6.6 KB | Display | |
Data in CIF | ![]() | 9.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 2608.997 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: synthetic construct / References: UniProt: Q5FBS0*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques. |
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Sample preparation
Details | Contents: 1.5mM peptide; pH 4 (10mM sodium phosphate buffer, 60mM NaCl); 90% H2O, 10% D2O Solvent system: 90% H2O/10% D2O |
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Sample conditions | Ionic strength: 60mM / pH: 4 / Pressure: ambient / Temperature: 293 K |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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Processing
NMR software | Name: CNS / Version: 1.1 / Classification: refinement |
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Refinement | Method: distance geometry simulated annealing / Software ordinal: 1 Details: The structures are based on a total of 133 NOE-derived distance constraints. |
NMR representative | Selection criteria: lowest energy |
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 50 / Conformers submitted total number: 15 |