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- PDB-1val: CONCANAVALIN A COMPLEX WITH 4'-NITROPHENYL-ALPHA-D-GLUCOPYRANOSIDE -
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Open data
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Basic information
Entry | Database: PDB / ID: 1val | ||||||
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Title | CONCANAVALIN A COMPLEX WITH 4'-NITROPHENYL-ALPHA-D-GLUCOPYRANOSIDE | ||||||
![]() | CONCANAVALIN A | ||||||
![]() | LECTIN / LEGUME LECTIN | ||||||
Function / homology | ![]() regulation of defense response to virus / D-mannose binding / defense response / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Kanellopoulos, P.N. / Tucker, P.A. / Hamodrakas, S.J. | ||||||
![]() | ![]() Title: The crystal structure of the complexes of concanavalin A with 4'-nitrophenyl-alpha-D-mannopyranoside and 4'-nitrophenyl-alpha-D-glucopyranoside. Authors: Kanellopoulos, P.N. / Pavlou, K. / Perrakis, A. / Agianian, B. / Vorgias, C.E. / Mavrommatis, C. / Soufi, M. / Tucker, P.A. / Hamodrakas, S.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 187.8 KB | Display | ![]() |
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PDB format | ![]() | 151.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.4 MB | Display | ![]() |
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Full document | ![]() | 1.5 MB | Display | |
Data in XML | ![]() | 36.6 KB | Display | |
Data in CIF | ![]() | 48.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 25622.385 Da / Num. of mol.: 4 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() #2: Sugar | ChemComp-PNG / #3: Chemical | ChemComp-MN / #4: Chemical | ChemComp-CA / #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.65 Å3/Da / Density % sol: 66.3 % | ||||||||||||||||||||||||||||||
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Crystal | *PLUS Density % sol: 65.7 % | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS pH: 8.5 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Oct 20, 1994 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 3→48 Å / Num. obs: 30575 / % possible obs: 99.1 % / Observed criterion σ(I): 0 / Rmerge(I) obs: 0.143 |
Reflection | *PLUS Num. measured all: 116891 |
Reflection shell | *PLUS Highest resolution: 3 Å / Lowest resolution: 3.3 Å / Rmerge(I) obs: 0.439 |
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Processing
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Refinement | Resolution: 3→6 Å / σ(F): 0
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Displacement parameters | Biso mean: 66.2 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.3 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3→6 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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