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Yorodumi- PDB-1cjp: CONCANAVALIN A COMPLEX WITH 4'-METHYLUMBELLIFERYL-ALPHA-D-GLUCOPY... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cjp | ||||||
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Title | CONCANAVALIN A COMPLEX WITH 4'-METHYLUMBELLIFERYL-ALPHA-D-GLUCOPYRANOSIDE | ||||||
Components | CONCANAVALIN A | ||||||
Keywords | LECTIN / LEGUME LECTIN | ||||||
Function / homology | Function and homology information regulation of defense response to virus / D-mannose binding / defense response / metal ion binding Similarity search - Function | ||||||
Biological species | Canavalia ensiformis (jack bean) | ||||||
Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 2.78 Å | ||||||
Authors | Hamodrakas, S.J. / Kanellopoulos, P.N. / Tucker, P.A. | ||||||
Citation | Journal: J.Struct.Biol. / Year: 1997 Title: The crystal structure of the complex of concanavalin A with 4'-methylumbelliferyl-alpha-D-glucopyranoside. Authors: Hamodrakas, S.J. / Kanellopoulos, P.N. / Pavlou, K. / Tucker, P.A. #1: Journal: J.Struct.Biol. / Year: 1996 Title: A Triclinic Crystal Form of the Lectin Concanavalin A Authors: Kanellopoulos, P.N. / Tucker, P.A. / Pavlou, K. / Agianian, B. / Hamodrakas, S.J. #2: Journal: J.Struct.Biol. / Year: 1996 Title: The Crystal Structure of the Complexes of Concanavalin a with 4'-Nitrophenyl-Alpha-D-Mannopyranoside and 4'-Nitrophenyl-Alpha-D-Glucopyranoside Authors: Kanellopoulos, P.N. / Pavlou, K. / Perrakis, A. / Agianian, B. / Vorgias, C.E. / Mavrommatis, C. / Soufi, M. / Tucker, P.A. / Hamodrakas, S.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cjp.cif.gz | 193.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cjp.ent.gz | 154.3 KB | Display | PDB format |
PDBx/mmJSON format | 1cjp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1cjp_validation.pdf.gz | 1.6 MB | Display | wwPDB validaton report |
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Full document | 1cjp_full_validation.pdf.gz | 1.6 MB | Display | |
Data in XML | 1cjp_validation.xml.gz | 37 KB | Display | |
Data in CIF | 1cjp_validation.cif.gz | 49.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cj/1cjp ftp://data.pdbj.org/pub/pdb/validation_reports/cj/1cjp | HTTPS FTP |
-Related structure data
Related structure data | 1vamS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 25622.385 Da / Num. of mol.: 4 / Source method: isolated from a natural source / Source: (natural) Canavalia ensiformis (jack bean) / References: UniProt: P02866 #2: Sugar | ChemComp-MUG / #3: Chemical | ChemComp-MN / #4: Chemical | ChemComp-CA / #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 3.7 Å3/Da / Density % sol: 66.78 % | ||||||||||||||||||||
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Crystal grow | *PLUS pH: 8.5 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Nov 30, 1994 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 37358 / % possible obs: 99 % / Observed criterion σ(I): 0 / Redundancy: 4 % / Rmerge(I) obs: 0.074 |
Reflection | *PLUS Highest resolution: 2.78 Å / Lowest resolution: 48 Å / Num. measured all: 151116 |
Reflection shell | *PLUS Highest resolution: 2.78 Å / Lowest resolution: 2.9 Å / % possible obs: 95.2 % / Rmerge(I) obs: 0.238 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 1VAM Resolution: 2.78→8 Å / σ(F): 0
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Displacement parameters | Biso mean: 51.41 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.25 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.78→8 Å
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Refine LS restraints |
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