+Open data
-Basic information
Entry | Database: PDB / ID: 1tfp | ||||||
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Title | TRANSTHYRETIN (FORMERLY KNOWN AS PREALBUMIN) | ||||||
Components | TRANSTHYRETIN | ||||||
Keywords | TRANSPORT (THYROXINE) / ALBUMIN / RETINOL-BINDING | ||||||
Function / homology | Function and homology information oocyte growth / yolk / thyroid hormone transport / hormone binding / retinol metabolic process / clathrin-coated vesicle / small molecule binding / thyroid hormone binding / purine nucleobase metabolic process / protein tetramerization ...oocyte growth / yolk / thyroid hormone transport / hormone binding / retinol metabolic process / clathrin-coated vesicle / small molecule binding / thyroid hormone binding / purine nucleobase metabolic process / protein tetramerization / response to virus / hormone activity / protein-containing complex assembly / protein heterodimerization activity / protein domain specific binding / protein-containing complex / extracellular space Similarity search - Function | ||||||
Biological species | Gallus gallus (chicken) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.9 Å | ||||||
Authors | Sunde, M. / Richardson, S.J. / Chang, L. / Pettersson, T.M. / Schreiber, G. / Blake, C.C.F. | ||||||
Citation | Journal: Eur.J.Biochem. / Year: 1996 Title: The crystal structure of transthyretin from chicken. Authors: Sunde, M. / Richardson, S.J. / Chang, L. / Pettersson, T.M. / Schreiber, G. / Blake, C.C. #1: Journal: J.Mol.Biol. / Year: 1978 Title: Structure of Prealbumin: Secondary, Tertiary and Quaternary Interactions Determined by Fourier Refinement at 1.8 A Authors: Blake, C.C. / Geisow, M.J. / Oatley, S.J. / Rerat, B. / Rerat, C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1tfp.cif.gz | 55.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1tfp.ent.gz | 40.9 KB | Display | PDB format |
PDBx/mmJSON format | 1tfp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1tfp_validation.pdf.gz | 430.6 KB | Display | wwPDB validaton report |
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Full document | 1tfp_full_validation.pdf.gz | 435 KB | Display | |
Data in XML | 1tfp_validation.xml.gz | 10.3 KB | Display | |
Data in CIF | 1tfp_validation.cif.gz | 13.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tf/1tfp ftp://data.pdbj.org/pub/pdb/validation_reports/tf/1tfp | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.6091, -0.6784, -0.4108), Vector: |
-Components
#1: Protein | Mass: 14175.711 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Gallus gallus (chicken) / Tissue: SERUM / References: UniProt: P27731 #2: Chemical | ChemComp-SO4 / | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.47 Å3/Da / Density % sol: 62 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / pH: 7 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 292 K |
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Diffraction source | Wavelength: 1.5418 |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.8→100 Å / Num. obs: 10781 / % possible obs: 78 % / Observed criterion σ(I): 2 / Redundancy: 2.3 % / Rmerge(I) obs: 0.083 |
Reflection | *PLUS Num. measured all: 22739 |
-Processing
Software |
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Refinement | Resolution: 2.9→8 Å / σ(F): 0
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Displacement parameters | Biso mean: 52.6 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.9→8 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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