Entry | Database: PDB / ID: 1t3e |
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Title | Structural basis of dynamic glycine receptor clustering |
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Components | - 49-mer fragment of Glycine receptor beta chain
- Gephyrin
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Keywords | STRUCTURAL PROTEIN/SIGNALING PROTEIN / alfa-beta / STRUCTURAL PROTEIN-SIGNALING PROTEIN COMPLEX |
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Function / homology | Function and homology information
Neurotransmitter receptors and postsynaptic signal transmission / Molybdenum cofactor biosynthesis / glycine receptor clustering / glycine-gated chloride channel complex / molybdopterin cofactor biosynthetic process / establishment of synaptic specificity at neuromuscular junction / acrosome reaction / synaptic transmission, glycinergic / molybdopterin adenylyltransferase / molybdopterin adenylyltransferase activity ...Neurotransmitter receptors and postsynaptic signal transmission / Molybdenum cofactor biosynthesis / glycine receptor clustering / glycine-gated chloride channel complex / molybdopterin cofactor biosynthetic process / establishment of synaptic specificity at neuromuscular junction / acrosome reaction / synaptic transmission, glycinergic / molybdopterin adenylyltransferase / molybdopterin adenylyltransferase activity / gamma-aminobutyric acid receptor clustering / molybdopterin molybdotransferase / molybdopterin molybdotransferase activity / nitrate reductase activity / postsynaptic specialization / chemical synaptic transmission, postsynaptic / inhibitory synapse / extracellularly glycine-gated ion channel activity / righting reflex / extracellularly glycine-gated chloride channel activity / Mo-molybdopterin cofactor biosynthetic process / glycinergic synapse / postsynaptic neurotransmitter receptor diffusion trapping / response to metal ion / adult walking behavior / molybdopterin cofactor binding / postsynaptic specialization membrane / neuromuscular process / neurotransmitter receptor activity / neurotransmitter receptor localization to postsynaptic specialization membrane / glycine binding / postsynaptic specialization, intracellular component / startle response / neuropeptide signaling pathway / transmembrane transporter complex / GABA-ergic synapse / regulation of postsynaptic membrane potential / protein targeting / monoatomic ion transport / chloride transmembrane transport / monoatomic ion transmembrane transport / synapse assembly / visual perception / tubulin binding / regulation of membrane potential / transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential / synaptic membrane / establishment of protein localization / cytoplasmic side of plasma membrane / transmembrane signaling receptor activity / nervous system development / protein-macromolecule adaptor activity / chemical synaptic transmission / postsynaptic membrane / perikaryon / postsynapse / molecular adaptor activity / postsynaptic density / cytoskeleton / neuron projection / signaling receptor binding / neuronal cell body / synapse / dendrite / protein-containing complex binding / ATP binding / identical protein binding / membrane / metal ion binding / plasma membrane / cytosol / cytoplasmSimilarity search - Function : / : / Glycine receptor beta / Molybdopterin biosynthesis moeA protein; domain 3 / Molybdopterin biosynthesis moea protein, domain 3. / Beta-clip / MoeA, C-terminal, domain IV / Molybdenum cofactor biosynthesis proteins signature 2. / Molybdopterin biosynthesis moea protein, domain 2 / Molybdenum cofactor biosynthesis proteins signature 1. ...: / : / Glycine receptor beta / Molybdopterin biosynthesis moeA protein; domain 3 / Molybdopterin biosynthesis moea protein, domain 3. / Beta-clip / MoeA, C-terminal, domain IV / Molybdenum cofactor biosynthesis proteins signature 2. / Molybdopterin biosynthesis moea protein, domain 2 / Molybdenum cofactor biosynthesis proteins signature 1. / MoeA, N-terminal and linker domain / MoeA, C-terminal, domain IV / MoeA, N-terminal and linker domain superfamily / MoeA, C-terminal, domain IV superfamily / Molybdopterin biosynthesis protein MoeA-like / MoeA N-terminal region (domain I and II) / MoeA C-terminal region (domain IV) / Molybdopterin biosynthesis moea protein, domain 2 / Molybdenum cofactor biosynthesis, conserved site / MoaB/Mog-like domain / Molybdenum Cofactor Biosythetic Enzyme; Chain A / MoaB/Mog domain / MoaB/Mog-like domain superfamily / Probable molybdopterin binding domain / Probable molybdopterin binding domain / Neurotransmitter-gated ion-channel, conserved site / Neurotransmitter-gated ion-channels signature. / Neurotransmitter-gated ion-channel transmembrane domain / Neurotransmitter-gated ion-channel transmembrane region / Neurotransmitter-gated ion-channel transmembrane domain superfamily / Neuronal acetylcholine receptor / Neurotransmitter-gated ion-channel / Neurotransmitter-gated ion-channel ligand-binding domain / Neurotransmitter-gated ion-channel ligand-binding domain superfamily / Neurotransmitter-gated ion-channel ligand binding domain / Beta Complex / Alpha-Beta Complex / Beta Barrel / 3-Layer(aba) Sandwich / Mainly Beta / Alpha BetaSimilarity search - Domain/homology |
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Biological species | ![](img/tx_mammal.gif) Rattus norvegicus (Norway rat) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.25 Å |
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Authors | Sola, M. / Bavro, V.N. / Timmins, J. / Franz, T. / Ricard-Blum, S. / Schoehn, G. / Ruigrok, R.W.H. / Paarmann, I. / Saiyed, T. / O'Sullivan, G.A. |
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Citation | Journal: Embo J. / Year: 2004 Title: Structural basis of dynamic glycine receptor clustering by gephyrin Authors: Sola, M. / Bavro, V.N. / Timmins, J. / Franz, T. / Ricard-Blum, S. / Schoehn, G. / Ruigrok, R.W.H. / Paarmann, I. / Saiyed, T. / O'Sullivan, G.A. / Schmitt, B. / Betz, H. / Weissenhorn, W. |
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History | Deposition | Apr 26, 2004 | Deposition site: RCSB / Processing site: RCSB |
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Revision 1.0 | Jul 27, 2004 | Provider: repository / Type: Initial release |
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Revision 1.1 | Apr 30, 2008 | Group: Version format compliance |
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Revision 1.2 | Jul 13, 2011 | Group: Advisory / Derived calculations ...Advisory / Derived calculations / Refinement description / Version format compliance |
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Revision 1.3 | Feb 14, 2024 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / struct_ncs_dom_lim / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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Revision 1.4 | Apr 3, 2024 | Group: Refinement description / Category: pdbx_initial_refinement_model |
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