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- PDB-1szo: Crystal Structure Analysis of the 6-Oxo Camphor Hydrolase His122A... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1szo | ||||||
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Title | Crystal Structure Analysis of the 6-Oxo Camphor Hydrolase His122Ala Mutant Bound to Its Natural Product (2S,4S)-alpha-Campholinic Acid | ||||||
![]() | 6-oxocamphor hydrolase | ||||||
![]() | HYDROLASE / Enzyme-Product Complex | ||||||
Function / homology | ![]() 6-oxocamphor hydrolase / hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Leonard, P.M. / Grogan, G. | ||||||
![]() | ![]() Title: Structure of 6-oxo camphor hydrolase H122A mutant bound to its natural product, (2S,4S)-alpha-campholinic acid: mutant structure suggests an atypical mode of transition state binding for a crotonase homolog. Authors: Leonard, P.M. / Grogan, G. #1: ![]() Title: The 2- Crystal Structure of 6-Oxo Camphor Hydrolase. NEW STRUCTURAL DIVERSITY IN THE CROTONASE SUPERFAMILY. Authors: Whittingham, J.L. / Turkenburg, J.P. / Verma, C.S. / Walsh, M.A. / Grogan, G. #2: ![]() Title: The Desymmetrization of Bicyclic beta-Diketones by an Enzymatic Retro-Claisen Reaction. A NEW REACTION OF THE CROTONASE SUPERFAMILY. Authors: Grogan, G. / Roberts, G.A. / Bougioukou, D. / Turner, N.J. / Flitsch, S.L. #3: ![]() Title: An Asymmetric Enzyme-Catalysed Retro-Claisen Reaction for the Desymmetrisation of Cyclic beta-Diketones. Authors: Grogan, G. / Graf, J. / Jones, A. / Parsons, S. / Turner, N.J. / Flitsch, S.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 610 KB | Display | ![]() |
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PDB format | ![]() | 500.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 540.7 KB | Display | ![]() |
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Full document | ![]() | 583.3 KB | Display | |
Data in XML | ![]() | 126.6 KB | Display | |
Data in CIF | ![]() | 173.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1o8uS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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3 | ![]()
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4 | ![]()
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5 | ![]()
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6 | ![]()
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Unit cell |
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Details | The biological assembly is a trimer, of which there are four complete copies in the asymmetric unit. |
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Components
#1: Protein | Mass: 28446.172 Da / Num. of mol.: 12 / Mutation: H122A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-CAX / ( #3: Chemical | ChemComp-CA / #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.2 Å3/Da / Density % sol: 42.9 % |
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Crystal grow | Temperature: 290 K / Method: vapor diffusion, hanging drop / pH: 5.6 Details: PEG MME 2000, calcium acetate, MES, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 290K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Nov 15, 2003 / Details: Toroidal mirror |
Radiation | Monochromator: Diamond (111), Ge(220) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.931 Å / Relative weight: 1 |
Reflection | Resolution: 1.9→30 Å / Num. all: 229538 / Num. obs: 229538 / % possible obs: 100 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 / Redundancy: 3.8 % / Biso Wilson estimate: 21.2 Å2 / Rmerge(I) obs: 0.06 / Rsym value: 0.047 / Net I/σ(I): 29.2 |
Reflection shell | Resolution: 1.9→1.96 Å / Redundancy: 3.7 % / Rmerge(I) obs: 0.282 / Mean I/σ(I) obs: 4.9 / Num. unique all: 19032 / Rsym value: 0.241 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB Entry 1O8U Resolution: 1.9→30 Å / Isotropic thermal model: Isotropic / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
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Displacement parameters | Biso mean: 18.7 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.9→30 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.9→1.947 Å
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