+Open data
-Basic information
Entry | Database: PDB / ID: 1ste | ||||||
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Title | STAPHYLOCOCCAL ENTEROTOXIN C2 FROM STAPHYLOCOCCUS AUREUS | ||||||
Components | STAPHYLOCOCCAL ENTEROTOXIN C2 | ||||||
Keywords | ENTEROTOXIN / SUPERANTIGEN / TOXIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Staphylococcus aureus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 2 Å | ||||||
Authors | Acharya, K.R. / Papageorgiou, A.C. | ||||||
Citation | Journal: Structure / Year: 1995 Title: Crystal structure of the superantigen enterotoxin C2 from Staphylococcus aureus reveals a zinc-binding site. Authors: Papageorgiou, A.C. / Acharya, K.R. / Shapiro, R. / Passalacqua, E.F. / Brehm, R.D. / Tranter, H.S. #1: Journal: Bacterial Superantigens: Structure, Function and Therapeutic Potential Year: 1995 Title: Molecular Topology is Important for the Function of Staphylococcal Superantigens Authors: Tranter, H. / Brehm, R.D. / Acharya, K.R. #2: Journal: Nature / Year: 1994 Title: Structural Basis of Superantigen Action Inferred from Crystal Structure of Toxic-Shock Syndrome Toxin-1 Authors: Acharya, K.R. / Passalacqua, E.F. / Jones, E.Y. / Harlos, K. / Stuart, D.I. / Brehm, R.D. / Tranter, H.S. #3: Journal: J.Mol.Biol. / Year: 1993 Title: Crystallization and Preliminary X-Ray Analysis of a Microbial Superantigen Staphylococcal Enterotoxin C2 Authors: Passalacqua, E.F. / Brehm, R.D. / Acharya, K.R. / Tranter, H.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ste.cif.gz | 56.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ste.ent.gz | 44.6 KB | Display | PDB format |
PDBx/mmJSON format | 1ste.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1ste_validation.pdf.gz | 363.9 KB | Display | wwPDB validaton report |
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Full document | 1ste_full_validation.pdf.gz | 367 KB | Display | |
Data in XML | 1ste_validation.xml.gz | 6.3 KB | Display | |
Data in CIF | 1ste_validation.cif.gz | 9.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/st/1ste ftp://data.pdbj.org/pub/pdb/validation_reports/st/1ste | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 27622.967 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Staphylococcus aureus (bacteria) / References: UniProt: P34071 |
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#2: Chemical | ChemComp-ZN / |
#3: Water | ChemComp-HOH / |
Nonpolymer details | ZINC ION IS TETRAHEDRA |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.43 Å3/Da / Density % sol: 50 % | ||||||||||||||||||||||||||||||
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Crystal grow | pH: 6.5 / Details: pH 6.5 | ||||||||||||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 16 ℃ / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 289 K |
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Diffraction source | Source: SYNCHROTRON / Site: SRS / Beamline: PX9.5 / Wavelength: 0.88 |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Dec 18, 1994 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.88 Å / Relative weight: 1 |
Reflection | Resolution: 2→40 Å / Num. obs: 19302 / % possible obs: 97.6 % / Observed criterion σ(I): -3 / Redundancy: 6.5 % / Rmerge(I) obs: 0.05 |
-Processing
Software |
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Refinement | Resolution: 2→8 Å / σ(F): 0
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Displacement parameters | Biso mean: 19.9 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.25 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→8 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Version: 3.1 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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