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Open data
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Basic information
Entry | Database: PDB / ID: 1skv | ||||||
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Title | Crystal Structure of D-63 from Sulfolobus Spindle Virus 1 | ||||||
![]() | Hypothetical 7.5 kDa protein | ||||||
![]() | VIRAL PROTEIN / Sulfolobus Spindle Virus / SSV / Archaeal / Crenarchaeal / Helix-Turn-Helix / Four Helix Bundle | ||||||
Function / homology | Hypothetical protein D-63 / Helix hairpin bin / Helix hairpin bin domain superfamily / Helix Hairpins / Orthogonal Bundle / Mainly Alpha / Protein D-63![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Kraft, P. / Kummel, D. / Oeckinghaus, A. / Gauss, G.H. / Wiedenheft, B. / Young, M. / Lawrence, C.M. | ||||||
![]() | ![]() Title: Structure of d-63 from sulfolobus spindle-shaped virus 1: surface properties of the dimeric four-helix bundle suggest an adaptor protein function Authors: Kraft, P. / Oeckinghaus, A. / Gauss, G.H. / Wiedenheft, B. / Young, M. / Lawrence, C.M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 56 KB | Display | ![]() |
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PDB format | ![]() | 46.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 442.3 KB | Display | ![]() |
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Full document | ![]() | 450.6 KB | Display | |
Data in XML | ![]() | 11 KB | Display | |
Data in CIF | ![]() | 14.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Details | The biological assembly is the AB dimer / The biological assembly is the CD dimer |
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Components
#1: Protein | Mass: 8402.422 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.99 Å3/Da / Density % sol: 58.48 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 5 Details: Ammonium Sulfate, ammonium acetate, PEG 4000, NaCl, Tris, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K |
-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Aug 16, 2002 | ||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2.6→20 Å / Num. all: 10225 / Num. obs: 10095 / % possible obs: 98.7 % / Observed criterion σ(F): -1.5 / Observed criterion σ(I): -3 / Redundancy: 8.6 % / Rmerge(I) obs: 0.043 / Net I/σ(I): 42 | ||||||||||||
Reflection shell | Resolution: 2.6→2.7 Å / Redundancy: 9.7 % / Rmerge(I) obs: 0.212 / Mean I/σ(I) obs: 9 / Num. unique all: 1121 / % possible all: 99.5 |
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Processing
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Refinement | Method to determine structure: ![]()
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Displacement parameters | Biso mean: 58 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.6→15 Å
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Refine LS restraints |
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