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- PDB-1sfb: BINDING OF PENTA-N-ACETYLCHITOPENTAOSE TO HEW LYSOZYME: A POWDER ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1sfb | |||||||||
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Title | BINDING OF PENTA-N-ACETYLCHITOPENTAOSE TO HEW LYSOZYME: A POWDER DIFFRACTION STUDY | |||||||||
![]() | LYSOZYME | |||||||||
![]() | HYDROLASE / POWDER DIFFRACTION / RIETVELD REFINEMENT / LYSOZYME | |||||||||
Function / homology | ![]() Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium ...Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium / defense response to bacterium / endoplasmic reticulum / extracellular space / identical protein binding / cytoplasm Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | POWDER DIFFRACTION / ![]() | |||||||||
![]() | Von Dreele, R.B. | |||||||||
![]() | ![]() Title: Binding of N-acetylglucosamine oligosaccharides to hen egg-white lysozyme: a powder diffraction study. Authors: Von Dreele, R.B. #1: ![]() Title: Combined Rietveld and Stereochemical Restraint Refinement of a Protein Crystal Structure Authors: Von Dreele, R.B. #2: ![]() Title: The First Protein Crystal Structure Determined from High Resolution X-Ray Powder Diffraction Data: A Variant of the T3R3 Human Insulin Zinc Complex Produced by Grinding Authors: Von Dreele, R.B. / Stephens, P.W. / Blessing, R.H. / Smith, G.D. #3: ![]() Title: Binding of N-Acetylglucoasmine to Chicken Egg Lysozyme: A Powder Diffraction Study Authors: Von Dreele, R.B. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 30.7 KB | Display | ![]() |
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PDB format | ![]() | 21.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Components
#1: Protein | Mass: 14331.160 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Polysaccharide | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2- ...2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Source method: isolated from a genetically manipulated source |
-Experimental details
-Experiment
Experiment | Method: POWDER DIFFRACTION |
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Sample preparation
Crystal | Density Matthews: 2.08 Å3/Da / Density % sol: 40.4 % |
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Crystal grow | Temperature: 298 K / Method: rapid precipitation / pH: 6 Details: NaCl, Na2HPO4, KH2PO4, penta-N-acetylchitopentaose, pH 6.0, rapid precipitation, temperature 298K |
Crystal grow | *PLUS |
Components of the solutions | *PLUS Conc.: 1.0 M / Details: pH6.0 / Chemical formula: NaCl |
-Data collection
Diffraction | Mean temperature: 296 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: CUSTOM-MADE / Detector: DIFFRACTOMETER / Date: Jul 21, 2001 / Details: Ge(111) analyser |
Radiation | Monochromator: double Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.700388 Å / Relative weight: 1 |
Reflection | Resolution: 3.22→40.13 Å / Num. all: 2254 / Num. obs: 2254 / % possible obs: 100 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 |
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Processing
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