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Yorodumi- PDB-1rze: X-RAY ANALYSIS OF METAL SUBSTITUTED HUMAN CARBONIC ANHYDRASE II D... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1rze | ||||||
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Title | X-RAY ANALYSIS OF METAL SUBSTITUTED HUMAN CARBONIC ANHYDRASE II DERIVATIVES | ||||||
Components | CARBONIC ANHYDRASE II | ||||||
Keywords | LYASE(OXO-ACID) | ||||||
Function / homology | Function and homology information positive regulation of cellular pH reduction / positive regulation of dipeptide transmembrane transport / regulation of monoatomic anion transport / secretion / cyanamide hydratase / cyanamide hydratase activity / regulation of chloride transport / arylesterase activity / Reversible hydration of carbon dioxide / angiotensin-activated signaling pathway ...positive regulation of cellular pH reduction / positive regulation of dipeptide transmembrane transport / regulation of monoatomic anion transport / secretion / cyanamide hydratase / cyanamide hydratase activity / regulation of chloride transport / arylesterase activity / Reversible hydration of carbon dioxide / angiotensin-activated signaling pathway / positive regulation of synaptic transmission, GABAergic / morphogenesis of an epithelium / regulation of intracellular pH / carbonic anhydrase / carbonate dehydratase activity / carbon dioxide transport / Erythrocytes take up oxygen and release carbon dioxide / Erythrocytes take up carbon dioxide and release oxygen / neuron cellular homeostasis / one-carbon metabolic process / apical part of cell / myelin sheath / extracellular exosome / zinc ion binding / plasma membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.9 Å | ||||||
Authors | Hakansson, K. / Wehnert, A. / Liljas, A. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1994 Title: X-ray analysis of metal-substituted human carbonic anhydrase II derivatives. Authors: Hakansson, K. / Wehnert, A. / Liljas, A. #1: Journal: J.Mol.Biol. / Year: 1992 Title: Structure of Native and Apo Carbonic Anhydrase II and Structure of Some of its Anion-Ligand Complexes Authors: Hakansson, K. / Carlsson, M. / Svensson, L.A. / Liljas, A. #2: Journal: J.Mol.Biol. / Year: 1992 Title: Structure of Cobalt Carbonic Anhydrase Complexed with Bicarbonate Authors: Hakansson, K. / Wehnert, A. | ||||||
History |
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Remark 700 | SHEET SHEET B1 OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET ...SHEET SHEET B1 OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS *B1A* AND *B1B* ARE DEFINED. STRANDS 5, 6, 7, 8, 9, AND 10 OF B1A ARE IDENTICAL TO STRANDS 2, 3, 4, 5, 6, AND 7 OF B1B, RESPECTIVELY. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1rze.cif.gz | 69.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1rze.ent.gz | 50.6 KB | Display | PDB format |
PDBx/mmJSON format | 1rze.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1rze_validation.pdf.gz | 423.3 KB | Display | wwPDB validaton report |
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Full document | 1rze_full_validation.pdf.gz | 429 KB | Display | |
Data in XML | 1rze_validation.xml.gz | 14.4 KB | Display | |
Data in CIF | 1rze_validation.cif.gz | 20.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rz/1rze ftp://data.pdbj.org/pub/pdb/validation_reports/rz/1rze | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: RESIDUE 3 HAS PARTIAL OCCUPANCY. 2: RESIDUES 4, 14, 64 AND 136 ARE PRESENTED WITH TWO ALTERNATIVE CONFORMATIONS. 3: CIS PROLINE - PRO 30 / 4: CIS PROLINE - PRO 202 5: A SULFATE ION IS UNEXPECTEDLY BOUND IN THE ACTIVE SITE (RESIDUE 500) WITH PARTIAL OCCUPANCY. |
-Components
#1: Protein | Mass: 29157.863 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / References: UniProt: P00918, carbonic anhydrase | ||
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#2: Chemical | ChemComp-NI / | ||
#3: Chemical | ChemComp-SO4 / | ||
#4: Water | ChemComp-HOH / | ||
Nonpolymer details | A SULFATE ION IS UNEXPECTEDSequence details | RESIDUES 125 AND 127 ARE ADJACENT IN THE SEQUENCE. | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.15 Å3/Da / Density % sol: 42.89 % |
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-Processing
Software | Name: PROFFT / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.15 / Highest resolution: 1.9 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.9 Å
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Refine LS restraints |
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