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- PDB-1ryk: Solution NMR Structure Protein yjbJ from Escherichia coli. Northe... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1ryk | |||||||||
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Title | Solution NMR Structure Protein yjbJ from Escherichia coli. Northeast Structural Genomics Consortium Target ET93; Ontario Centre for Structural Proteomics target EC0298_1_69; | |||||||||
![]() | Protein yjbJ | |||||||||
![]() | structural genomics / unknown function / Alpha protein / Protein Structure Initiative / OCSP / NESG / PSI / Northeast Structural Genomics Consortium | |||||||||
Function / homology | ![]() | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | SOLUTION NMR / torsion angle dynamics, simulated annealing, restrained molecular dynamic simulations | |||||||||
![]() | Pineda-Lucena, A. / Liao, J. / Wu, B. / Yee, A. / Cort, J.R. / Kennedy, M.A. / Edwards, A.M. / Arrowsmith, C.H. / Northeast Structural Genomics Consortium (NESG) | |||||||||
![]() | ![]() Title: An NMR approach to structural proteomics. Authors: Pineda-Lucena, A. / Liao, J. / Wu, B. / Yee, A. / Cort, J.R. / Kennedy, M.A. / Edwards, A.M. / Arrowsmith, C.H. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 442.9 KB | Display | ![]() |
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PDB format | ![]() | 371.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 341.1 KB | Display | ![]() |
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Full document | ![]() | 484.4 KB | Display | |
Data in XML | ![]() | 26 KB | Display | |
Data in CIF | ![]() | 41 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1jcuC ![]() 1jdqC ![]() 1je3C ![]() 1jrmC ![]() 1jw2C ![]() 1jw3C ![]() 1ryjC C: citing same article ( |
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Similar structure data | |
Other databases |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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NMR ensembles |
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Components
#1: Protein | Mass: 8339.261 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: torsion angle dynamics, simulated annealing, restrained molecular dynamic simulations Software ordinal: 1 Details: 2036 noe-derived distance constraints, 101 dihedral angle constraints, 62 hydrogen bonds | ||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |