+Open data
-Basic information
Entry | Database: PDB / ID: 1rfa | ||||||
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Title | NMR SOLUTION STRUCTURE OF THE RAS-BINDING DOMAIN OF C-RAF-1 | ||||||
Components | RAF1C-Raf | ||||||
Keywords | SERINE/THREONINE-PROTEIN KINASE / SIGNAL TRANSDUCTION PROTEIN / SERINE-THREONINE-PROTEIN KINASE complex | ||||||
Function / homology | Function and homology information death-inducing signaling complex assembly / intermediate filament cytoskeleton organization / type B pancreatic cell proliferation / regulation of Rho protein signal transduction / SHOC2 M1731 mutant abolishes MRAS complex function / Gain-of-function MRAS complexes activate RAF signaling / Rap1 signalling / regulation of cell motility / insulin secretion involved in cellular response to glucose stimulus / Negative feedback regulation of MAPK pathway ...death-inducing signaling complex assembly / intermediate filament cytoskeleton organization / type B pancreatic cell proliferation / regulation of Rho protein signal transduction / SHOC2 M1731 mutant abolishes MRAS complex function / Gain-of-function MRAS complexes activate RAF signaling / Rap1 signalling / regulation of cell motility / insulin secretion involved in cellular response to glucose stimulus / Negative feedback regulation of MAPK pathway / GP1b-IX-V activation signalling / IFNG signaling activates MAPKs / ERBB2-ERBB3 signaling pathway / regulation of cell differentiation / face development / pseudopodium / somatic stem cell population maintenance / neurotrophin TRK receptor signaling pathway / thyroid gland development / extrinsic apoptotic signaling pathway via death domain receptors / MAP kinase kinase kinase activity / negative regulation of protein-containing complex assembly / Schwann cell development / type II interferon-mediated signaling pathway / negative regulation of extrinsic apoptotic signaling pathway via death domain receptors / response to muscle stretch / activation of adenylate cyclase activity / myelination / CD209 (DC-SIGN) signaling / insulin-like growth factor receptor signaling pathway / thymus development / RAF activation / Signaling by high-kinase activity BRAF mutants / wound healing / MAP2K and MAPK activation / negative regulation of cysteine-type endopeptidase activity involved in apoptotic process / Stimuli-sensing channels / Negative regulation of MAPK pathway / Signaling by RAF1 mutants / Signaling by moderate kinase activity BRAF mutants / Paradoxical activation of RAF signaling by kinase inactive BRAF / Signaling downstream of RAS mutants / MAPK cascade / Signaling by BRAF and RAF1 fusions / insulin receptor signaling pathway / positive regulation of peptidyl-serine phosphorylation / regulation of apoptotic process / mitochondrial outer membrane / positive regulation of MAPK cascade / non-specific serine/threonine protein kinase / protein kinase activity / negative regulation of cell population proliferation / protein phosphorylation / protein serine kinase activity / protein serine/threonine kinase activity / apoptotic process / negative regulation of apoptotic process / Golgi apparatus / enzyme binding / signal transduction / positive regulation of transcription by RNA polymerase II / mitochondrion / ATP binding / identical protein binding / metal ion binding / nucleus / plasma membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Emerson, S.D. / Madison, V.S. / Palermo, R.E. / Waugh, D.S. / Scheffler, J.E. / Tsao, K.-L. / Kiefer, S.E. / Liu, S.P. / Fry, D.C. | ||||||
Citation | Journal: Biochemistry / Year: 1995 Title: Solution structure of the Ras-binding domain of c-Raf-1 and identification of its Ras interaction surface. Authors: Emerson, S.D. / Madison, V.S. / Palermo, R.E. / Waugh, D.S. / Scheffler, J.E. / Tsao, K.L. / Kiefer, S.E. / Liu, S.P. / Fry, D.C. #1: Journal: Biochemistry / Year: 1994 Title: Chemical Shift Assignments and Folding Topology of the Ras-Binding Domain of Human Raf-1 as Determined by Heteronuclear Three-Dimensional NMR Spectroscopy Authors: Emerson, S.D. / Waugh, D.S. / Scheffler, J.E. / Tsao, K.L. / Prinzo, K.M. / Fry, D.C. #2: Journal: J.Biol.Chem. / Year: 1994 Title: Characterization of a 78-Residue Fragment of C-Raf-1 that Comprises a Minimal Binding Domain for the Interaction with Ras-GTP Authors: Scheffler, J.E. / Waugh, D.S. / Bekesi, E. / Kiefer, S.E. / Losardo, J.E. / Neri, A. / Prinzo, K.M. / Tsao, K.L. / Wegrzynski, B. / Emerson, S.D. / al., et | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1rfa.cif.gz | 729.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1rfa.ent.gz | 633.3 KB | Display | PDB format |
PDBx/mmJSON format | 1rfa.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rf/1rfa ftp://data.pdbj.org/pub/pdb/validation_reports/rf/1rfa | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 8975.455 Da / Num. of mol.: 1 Fragment: RAS BINDING DOMAIN, RESIDUES 55 - 132 WITH AN ADDITIONAL ALA AT THE N-TERMINUS Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Organ: FETAL LIVER / Plasmid: PDW333 / Production host: Escherichia coli (E. coli) References: UniProt: P04049, Transferases; Transferring phosphorus-containing groups; Phosphotransferases with an alcohol group as acceptor |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other |
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-Processing
NMR software | Name: CHARMM / Version: 22 / Developer: BROOKS ET AL. / Classification: refinement |
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NMR ensemble | Conformers submitted total number: 30 |