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Yorodumi- PDB-1qsx: SOLUTION NMR STRUCTURE OF THE 2:1 HOECHST 33258-D(CTTTTGCAAAAG)2 ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1qsx | ||||||||||||||||||
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Title | SOLUTION NMR STRUCTURE OF THE 2:1 HOECHST 33258-D(CTTTTGCAAAAG)2 COMPLEX | ||||||||||||||||||
Components | 5'-D(CP*Keywords | DNA / DRUG-DNA COMPLEX / HOECHST 33258 / DEOXYRIBONUCLEIC ACID / MINOR GROOVE RECOGNITION / DOUBLE HELIX / NMR SPECTROSCOPY | Function / homology | Chem-HT / DNA / DNA (> 10) | Function and homology information Method | SOLUTION NMR / 1NS RESTRAINED MOLECULAR DYNAMICS | Authors | Gavathiotis, E. / Sharman, G.J. / Searle, M.S. | Citation | Journal: Nucleic Acids Res. / Year: 2000 Title: Sequence-dependent variation in DNA minor groove width dictates orientational preference of Hoechst 33258 in A-tract recognition: solution NMR structure of the 2:1 complex with d(CTTTTGCAAAAG)(2). Authors: Gavathiotis, E. / Sharman, G.J. / Searle, M.S. #1: Journal: Nucleic Acids Res. / Year: 1990 Title: Sequence-Specific Interaction of Hoechst 33258 with the Minor Groove of an Adenine-Tract DNA Duplex Studied in Solution by 1H NMR Spectroscopy Authors: Searle, M.S. / Embrey, K.J. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1qsx.cif.gz | 28.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1qsx.ent.gz | 18.9 KB | Display | PDB format |
PDBx/mmJSON format | 1qsx.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1qsx_validation.pdf.gz | 416.4 KB | Display | wwPDB validaton report |
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Full document | 1qsx_full_validation.pdf.gz | 417.5 KB | Display | |
Data in XML | 1qsx_validation.xml.gz | 2.8 KB | Display | |
Data in CIF | 1qsx_validation.cif.gz | 3.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qs/1qsx ftp://data.pdbj.org/pub/pdb/validation_reports/qs/1qsx | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 3661.416 Da / Num. of mol.: 2 / Source method: obtained synthetically / Details: SOLID PHASE SYNTHESIS #2: Chemical | ChemComp-NA / #3: Chemical | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Details | Contents: 1.5mM Hoechst 33258-D(CTTTTGCAAAAG)2 100mM NaCl, 10mM NaH2PO4 buffer Solvent system: D2O and 90% H20 10% D20 |
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Sample conditions | pH: 7 / Temperature: 288 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 500 MHz |
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-Processing
Refinement | Method: 1NS RESTRAINED MOLECULAR DYNAMICS / Software ordinal: 1 |
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NMR ensemble | Conformers submitted total number: 1 |