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- PDB-1ql4: Structure of the soluble domain of cytochrome c552 from Paracoccu... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1ql4 | ||||||
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Title | Structure of the soluble domain of cytochrome c552 from Paracoccus denitrificans in the oxidised state | ||||||
![]() | CYTOCHROME C552 | ||||||
![]() | ELECTRON TRANSPORT PROTEIN (CYTOCHROME) / ELECTRON TRANSFER / OXIDISED | ||||||
Function / homology | ![]() electron transfer activity / heme binding / metal ion binding / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Harrenga, A. / Reincke, B. / Rueterjans, H. / Ludwig, B. / Michel, H. | ||||||
![]() | ![]() Title: Structure of the Soluble Domain of Cytochrome C552 from Paracoccus Denitrificans in the Oxidized and Reduced States Authors: Harrenga, A. / Reincke, B. / Rueterjans, H. / Ludwig, B. / Michel, H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 94.4 KB | Display | ![]() |
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PDB format | ![]() | 79.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 670.6 KB | Display | ![]() |
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Full document | ![]() | 674.5 KB | Display | |
Data in XML | ![]() | 9 KB | Display | |
Data in CIF | ![]() | 17.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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3 | ![]()
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4 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 10422.782 Da / Num. of mol.: 4 / Fragment: SOLUBLE DOMAIN Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-HEC / #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.47 Å3/Da / Density % sol: 49.7 % | ||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 4.5 / Details: pH 4.50 | ||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 18 ℃ / pH: 7.2 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K | |||||||||
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Diffraction source | Source: ![]() ![]() ![]() | |||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||
Radiation wavelength |
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Reflection | Resolution: 1.5→15 Å / Num. obs: 67817 / % possible obs: 99.9 % / Redundancy: 3.5 % / Biso Wilson estimate: 15 Å2 / Rmerge(I) obs: 0.056 / Net I/σ(I): 20.2 | |||||||||
Reflection shell | Resolution: 1.5→1.53 Å / Redundancy: 3.1 % / Rmerge(I) obs: 0.218 / Mean I/σ(I) obs: 4.2 / % possible all: 99.9 | |||||||||
Reflection | *PLUS Highest resolution: 1.5 Å / Lowest resolution: 15 Å / Redundancy: 3.5 % / Num. measured all: 241918 / Rmerge(I) obs: 0.056 | |||||||||
Reflection shell | *PLUS % possible obs: 99.9 % / Redundancy: 3.1 % / Rmerge(I) obs: 0.218 / Mean I/σ(I) obs: 4.2 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Solvent model: USED | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 17.5 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.5→15 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.5→1.59 Å / Rfactor Rfree error: 0.01 / Total num. of bins used: 6
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Software | *PLUS Name: CNS / Version: 0.3 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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