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- PDB-1qft: HISTAMINE BINDING PROTEIN FROM FEMALE BROWN EAR RHIPICEPHALUS APP... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1qft | ||||||
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Title | HISTAMINE BINDING PROTEIN FROM FEMALE BROWN EAR RHIPICEPHALUS APPENDICULATUS | ||||||
![]() | PROTEIN (FEMALE-SPECIFIC HISTAMINE BINDING PROTEIN 2) | ||||||
![]() | LIGAND BINDING PROTEIN / LIPOCALIN | ||||||
Function / homology | ![]() amine binding / symbiont-mediated perturbation of host defenses / extracellular region Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Paesen, G.C. / Adams, P.L. / Harlos, K. / Nuttal, P.A. / Stuart, D.I. | ||||||
![]() | ![]() Title: Tick histamine-binding proteins: isolation, cloning, and three-dimensional structure. Authors: Paesen, G.C. / Adams, P.L. / Harlos, K. / Nuttall, P.A. / Stuart, D.I. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 91.4 KB | Display | ![]() |
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PDB format | ![]() | 70.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 385.8 KB | Display | ![]() |
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Full document | ![]() | 390.9 KB | Display | |
Data in XML | ![]() | 8.9 KB | Display | |
Data in CIF | ![]() | 15.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 19810.441 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Organ: SALIVARY GLAND / Plasmid: PACC129.1 / Genus (production host): Spodoptera / Cell line (production host): SPODOPTERA / Production host: ![]() #2: Chemical | ChemComp-HSM / #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.87 Å3/Da / Density % sol: 57.12 % | |||||||||||||||||||||||||
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Crystal grow | pH: 6.5 / Details: pH 6.5 | |||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.072 Å / Relative weight: 1 |
Reflection | Resolution: 1.25→20 Å / Num. obs: 108735 / % possible obs: 86.3 % / Redundancy: 5.2 % / Rsym value: 0.044 |
Reflection | *PLUS Rmerge(I) obs: 0.184 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 1.25→20 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 20 Å / σ(F): 0 / Rfactor obs: 0.187 / Rfactor Rfree: 0.201 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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